Bioinformatics
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Bioinformatics, Computational Biology & Systems Biology

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Bioinformatics
16.5K subscribers
Bioinformatics
📃 Large Language Models in Healthcare and Medical Domain: A Review

📘Journal: Informatics (I.F.=3.4)
🗓Publish year: 2024

🧑‍💻Authors: Zabir Al Nazi and Wei Peng
🏢University: University of California Riverside - Stanford University, USA

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#review #chatGPT #llm
👍6
4.77K viewsedited  
Bioinformatics
📃 Large language models and their applications in bioinformatics

📔 Journal: Computational and Structural Biotechnology Journal (I.F.=4.5)
🗓Publish year: 2024

🧑‍💻Authors: Oluwafemi A. Sarumi, Dominik Heider
🏢Universities: Heinrich-Heine-University Duesseldorf, Germany

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#review #llm #large_language_models
👍7🔥2👏1💯1
5.13K views
Bioinformatics
📄 Large Language Models for Bioinformatics

🗓 Publish year: 2025

🧑‍💻Authors: Wei Ruan, Yanjun Lyu, Jing Zhang, ...
🏢Universities:
🇺🇸USA: University of Georgia, University of Texas at Arlington, UNC Chapel Hill, Mayo Clinic, University of Colorado, University of Tennessee at
Chattanooga, University Indianapolis, Lehigh University

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📲Channel: @Bioinformatics
#review #chatgpt #generative_ai #llm
👍9
4.35K views
Bioinformatics
📄 Deep Generative Models for Therapeutic Peptide Discovery: A Comprehensive Review

📗 Journal: ACM Computing Surveys (🔥I.F.=23.8)
🗓 Publish year: 2025

🧑‍💻Authors: Leshan Lai, Yuansheng Liu, Bosheng Song, ...
🏢Universities: Hunan University, China - State University of New York, USA

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📲Channel: @Bioinformatics
#review #llm #peptide #therapeutic
👍1
4.67K views
Bioinformatics
📃 Foundation models for bioinformatics

📘 Journal: Quantitative Biology (I.F.=0.6)
🗓Publish year: 2024

🧑‍💻Authors: Ziyu Chen, Lin Wei, Ge Gao
🏢Universities: Peking University, China

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#review #Transformer #chatgpt #llm
👌2
3.99K views
Bioinformatics
📃 LLMs for Drug-Drug Interaction Prediction: A Comprehensive Comparison

🗓 Publish year: 2025

🧑‍💻Authors: Gabriele De Vito, Filomena Ferrucci, Athanasios Angelakis
🏢Universities: University of Salerno, Italy - University of Amsterdam, The Netherlands

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#review #llm #chantgpt
👍5❤3🔥1👏1
3.54K views
Bioinformatics
📑 A review on the applications of Transformer-based language models for nucleotide sequence analysis

📕Journal: Computational and Structural Biotechnology Journal (I.F.=4.5)
🗓 Publish year: 2025

🧑‍💻Authors: Nimisha Ghosh, Daniele Santoni, Indrajit Saha, Giovanni Felici
🏢Universities: Shiv Nadar University, India - National Research Council of Italy, Italy -

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#review #chatgpt #llm #dna #sequence
👍10❤1
3.47K views
Bioinformatics
📑 Application of large language models in disease diagnosis and treatment

📙 Journal: Chinese Medical Journal (I.F.=7.5)
🗓 Publish year: 2024

🧑‍💻Authors: Xintian Yang, Tongxin Li, Qin Su, ...
🏢Universities: Fourth Military Medical University, China

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📲Channel: @Bioinformatics
#review #llm #chatgpt #disease
❤6👍2👌2👏1
3.1K views
Bioinformatics
📃Large Language Models in Bioinformatics: A Survey

🗓 Publish year: 2025

🧑‍💻Authors: Z Wang, Z Wang, J Jiang, ...
🏢Universities: The Chinese University of Hong Kong - Peking University Third Hospital - The Hong Kong Polytechnic University, HK

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#review #llm
👍3👌1
2.9K views
Bioinformatics
📑 Recent advances in deep learning and language models for studying the microbiome

📕Journal: Frontiers in Genetics (I.F.=2.8)
🗓 Publish year: 2025

🧑‍💻Authors: Binghao Yan, Yunbi Nam, Lingyao Li, ...
🏢Universities: University of Pennsylvania, Vanderbilt University Medical Center, University of South Florida, University of Pittsburgh, United States

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#review #deep_learning #llm #microbiome
👍3👌1
2.69K views
Bioinformatics
📄 Large Language Models in Genomics—A Perspective on Personalized Medicine

📓 Journal: Bioengineering (I.F.=3.8)
🗓Publish year: 2025

🧑‍💻Authors: Shahid AliD,Yazdan Ahmad Qadri, Khurshid Ahmad, ...
🏢Universities: Hainan University, China - Yeungnam University, Korea - Qassim University, Saudi Arabia - Anglia Ruskin University, UK - University of Agder, Norway

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#review #llm #genomic #medicine
👍4❤2
3.44K views
Bioinformatics
📼 Integrating RAG Chatbots into Bioinformatics Platforms

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📲Channel: @Bioinformatics
#video #ai #llm #rag
YouTube
Integrating RAG Chatbots into Bioinformatics Platforms
The advent of large language models (LLMs) has revolutionized numerous fields with their impressive performance on a variety of natural language processing tasks. However, their application in biomedical research remains controversial due to their well-documented…
👍3
2.67K views
Bioinformatics
📄 A Survey of Large Language Model for Drug Research and Development

📓 Journal: IEEE Access (I.F.=0.8)
🗓Publish year: 2025

🧑‍💻Authors: Huijie Guo; Xudong Xing; Yongjie Zhou; ...
🏢Universities: China Pharmaceutical University & Chinese Academy of Sciences, China

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#review #drug #llm
👍4❤2
2.65K viewsedited  
Bioinformatics
📑 Scientific Large Language Models: A Survey on Biological & Chemical Domains

📘 Journal: ACM Computing Surveys (🔥I.F.=28)
🗓Publish year: 2025

🧑‍💻Authors: Qiang Zhang, Keyan Ding, Tianwen Lv, ...
🏢Universities: Zhejiang University, China

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📦 Supplementary Materials

📲Channel: @Bioinformatics
#review #llm #protein #molecular #genomic
👍7❤3🔥1👏1👌1
3.36K views
Bioinformatics
📃 Large language models transform biological research: from architecture to utilization

📘 Journal: Science China Information Sciences (I.F.=7.6) Q1
🗓Publish year: 2025

🧑‍💻Authors: Tao Wang & Zeyu Luo
🏢Universities: Northwestern Polytechnical University & Northeast Forestry University, China

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#review #llm #ai
❤6👍1🔥1👏1👌1
3.05K views
Bioinformatics
📽 Generative Models and Their Applications in Computational Biology

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#video #chatgpt #llm #generative_ai
YouTube
Or Zuk | Generative Models and Their Applications in Computational Biology | CGSI 2025
Or Zuk | Generative Models and Their Applications in Computational Biology | CGSI 2025
Related Papers:

1. Kingma & Welling (2014), Auto-Encoding Variational Bayes, https://arxiv.org/abs/1312.6114

2. Ho et al. (2020), Denoising Diffusion Probabilistic Models…
👍2❤1
2.33K views
Bioinformatics
📃 A Survey on Foundation Language Models for Single-cell Biology

📖 Conference: In Proceedings of the 63rd Annual Meeting of the Association for Computational Linguistics
🗓Publish year: 2025

🧑‍💻Authors: Fan Zhang, Hao Chen, Zhihong Zhu, ...
🏢University: The Hong Kong University of Science and Technology, Peking University, Great Bay University, Westlake University

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#review #llm #single_cell
👍4❤1
2.4K views
Bioinformatics
📃 The role of foundation models in enhancing the interpretability of multiomics modalities in precision medicine: Beyond digital twins

📕 Journal: FEBS Open Bio (I.F.=2.3)
🗓Publish year: 2025

🧑‍💻Authors: Sakhaa Alsaedi, Xin Gao, Takashi Gojobori
🏢University: King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia

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#review #llm #multiomics #digital_twins #medicine
❤2👍1
1.87K views
Bioinformatics
📹 LLM agents and bioinformatic

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📦 Code

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#video #llm #chatgpt
YouTube
AI bioinformatics workshop LLM agents and bioinformatic MCP servers
About the workshop
​We will teach you about LLM agents, how they work, and how you can make them use call tools and communicate with each other. We will use our https://github.com/longevity-genie/just-agents library as an example, but the principles there…
❤6👏1
707 views