Single-Cell Papers
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Daily list of research papers on single-cell transcriptomics
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Good morning Here are today's papers!

Preprints:👇
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Papers:👇
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Good morning Here are today's papers!

Preprints:👇
✏️ SPP1hi macrophages in fibrin niches promote hyperplastic tissue remodeling in rheumatoid arthritis synovium
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Papers:👇
🗞️ Comprehensive Multi-Omics Profiling of Tertiary Lymphoid Structures Reveals Immunogenetic Landscapes and Prognostic Subtypes in Lung Adenocarcinoma.
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Enjoy your reading! 👋
Good morning Here are today's papers!

Preprints:👇
✏️ Single-cell spatial multiomics identifies POSTN+ CAFs mediating chemoradiotherapy resistance in rectal cancer
✏️ MilliMap: interactive closed-loop analysis for spatial omics
✏️ STAT: A multi-agent framework for integrated and interactive spatial transcriptomics analysis
✏️ Clonal embeddings allow exploratory analysis of lineage-resolved single-cell data
✏️ Building computational benchmarks: an Omnibenchmark reimplementation of a single-cell preprocessing pipeline evaluation
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Papers:👇
🗞️ Charting spatial ligand-target activity using Renoir.
🗞️ DiffuST: a Latent Diffusion Model for Spatial Transcriptomics Denoising.
🗞️ Neighborhood-informed positional information for precise cell identity specification.
🗞️ CellFuse enables Multi-modal Integration of Single-cell and Spatial Proteomics Data for Systems-level Analysis in Cancer.
🗞️ Transcriptional and ubiquitinative suppression of macrophage CST3 disrupts colonic homeostasis through defective efferocytosis.
🗞️ Extracellular vimentin promotes neutrophil-dominant granulomatous inflammation in progressive pulmonary sarcoidosis.
🗞️ RegFormer: a single-cell foundation model powered by gene regulatory hierarchies.
🗞️ Cancer-Associated Fibroblasts Promote Epithelial-Mesenchymal Transition and Classical to Basal Subtype Shift in Pancreatic Cancer.
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Enjoy your reading! 👋
Good morning Here are today's papers!

Preprints:👇
✏️ Sex-biased Fibroblast Subpopulations and Transcriptional Programs Reveal Mechanisms of Skin Lesion Development in Systemic Sclerosis
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Good morning Here are today's papers!

Preprints:👇
✏️ Single-Cell Atlas of Renal Cell Carcinoma Brain Metastasis Uncovers Mechanisms of Immune Dysfunction and Resistance
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Papers:👇
🗞️ iS2C2: a cointelligent platform for mechanistic discovery of disease cellular crosstalk.
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Enjoy your reading! 👋
Good morning Here are today's papers!

Preprints:👇
No preprints found today.
────────────

Papers:👇
No papers found today.
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Enjoy your reading! 👋
Good morning Here are today's papers!

Preprints:👇
✏️ IntegrateRigor: annotation-free integration optimization for cell identity recovery reveals cancer-immune interface niches
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Papers:👇
🗞️ CXCL16 promotes macrophage-driven inflammation and vascular smooth muscle cell phenotypic switching during carotid plaque destabilization.
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Enjoy your reading! 👋
Good morning Here are today's papers!

Preprints:👇
No preprints found today.
────────────

Papers:👇
No papers found today.
────────────

Enjoy your reading! 👋
Good morning Here are today's papers!

Preprints:👇
No preprints found today.
────────────

Papers:👇
No papers found today.
────────────

Enjoy your reading! 👋
Good morning Here are today's papers!

Preprints:👇
No preprints found today.
────────────

Papers:👇
🗞️ Beyond Suppression: The Plasticity, Dysfunction, and Therapeutic Reprogramming of Regulatory T Cells in Inflammatory Bowel Disease.
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Enjoy your reading! 👋
Good morning Here are today's papers!

Preprints:👇
No preprints found today.
────────────

Papers:👇
No papers found today.
────────────

Enjoy your reading! 👋