OSF Read-Only Mode
The non-profit organization "Center for Open Science" (COS) announced changes to the Open Science Framework (OSF) platform, where research groups conducted projects and shared materials. As of November 16, 2026, it will no longer be possible to create new projects and components in OSF, and as of February 19, 2027, all projects will become read-only. Already created public projects will remain accessible via their existing links and DOI - permanent digital identifiers; pre-registrations and preprints will continue to function.
The OSF platform was opened for public use in 2012 and helped research groups maintain a record of their work, including plans, files, and decisions made. When the results were ready for publication, this record could be opened along with them, making the research process more transparent. Over time, OSF had to serve as a workspace, a place to record the research process, a repository for published results, and a free private repository.
According to COS, the platform has over one million registered users and over 29 million published files. However, 63% of projects - over 650,000 - were never made public, and nearly 200,000 users used OSF only for private storage. Thousands of spam accounts uploaded pirated movies and advertisements to the platform. Maintaining such a system would cost an estimated $4-5 million per year, while regular revenue covers only 10-20% of this amount.
Therefore, OSF will focus on public research records, including plans, pre-registrations, preprints, and links to results. New data, code, and other materials can be stored in a suitable service or repository and then linked to OSF records. As explained by Brian Nosek, "researchers will have to use a larger number of tools, but each of them, including OSF, will perform its role well in open science". After February 2027, completed public projects will be preserved as accessible records of work, with new data and code living in multiple services, and OSF linking plans and preprints to external materials, as cited in Nature Aging, July 2026.
🔗 Read original →
The non-profit organization "Center for Open Science" (COS) announced changes to the Open Science Framework (OSF) platform, where research groups conducted projects and shared materials. As of November 16, 2026, it will no longer be possible to create new projects and components in OSF, and as of February 19, 2027, all projects will become read-only. Already created public projects will remain accessible via their existing links and DOI - permanent digital identifiers; pre-registrations and preprints will continue to function.
The OSF platform was opened for public use in 2012 and helped research groups maintain a record of their work, including plans, files, and decisions made. When the results were ready for publication, this record could be opened along with them, making the research process more transparent. Over time, OSF had to serve as a workspace, a place to record the research process, a repository for published results, and a free private repository.
According to COS, the platform has over one million registered users and over 29 million published files. However, 63% of projects - over 650,000 - were never made public, and nearly 200,000 users used OSF only for private storage. Thousands of spam accounts uploaded pirated movies and advertisements to the platform. Maintaining such a system would cost an estimated $4-5 million per year, while regular revenue covers only 10-20% of this amount.
Therefore, OSF will focus on public research records, including plans, pre-registrations, preprints, and links to results. New data, code, and other materials can be stored in a suitable service or repository and then linked to OSF records. As explained by Brian Nosek, "researchers will have to use a larger number of tools, but each of them, including OSF, will perform its role well in open science". After February 2027, completed public projects will be preserved as accessible records of work, with new data and code living in multiple services, and OSF linking plans and preprints to external materials, as cited in Nature Aging, July 2026.
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help.osf.io
OSF Projects Transition
This Article Is Licensed Under CCO For Maximum Reuse. Overview OSF Project workflows are being phased out between November 2026 and February 2027. Read more abo
OptiPrime Edits DNA
OptiPrime is a model that selects RNA instructions for prime editing, a method of precise replacement of short DNA segments. On August 12, the journal Nature Biotechnology published a study on OptiPrime, which was trained on 297,962 measurements and tested in cells and mice.
The prime editor cuts one DNA strand and copies the desired replacement from the pegRNA instruction. The cell then repairs the cut, but the MMR system can restore the original sequence, causing the edit to disappear. To make a successful edit, one needs to choose a target location on the DNA, the RNA instruction device, and quiet replacements nearby that preserve the protein sequence but change how the cell's repair system recognizes the site.
The authors of the study collected large libraries of instructions and tested them in cells with weakened and functional MMR systems. OptiPrime evaluates each stage of the editing process separately and combines these assessments to rank the instructions. The model was able to predict the effectiveness of different instructions, and when its components were removed or randomly rearranged, the accuracy of its predictions decreased.
In May, a team redesigned the prime editor protein to remain active in cells for longer. OptiPrime selects RNA instructions that take into account the cell's repair system, and in tests, it was able to achieve editing efficiencies of up to 22%. In a mouse model of the Kif1a gene, OptiPrime proposed combinations of quiet replacements that resulted in editing efficiencies of over 40% in the brain after four weeks.
🔗 Read original →
OptiPrime is a model that selects RNA instructions for prime editing, a method of precise replacement of short DNA segments. On August 12, the journal Nature Biotechnology published a study on OptiPrime, which was trained on 297,962 measurements and tested in cells and mice.
The prime editor cuts one DNA strand and copies the desired replacement from the pegRNA instruction. The cell then repairs the cut, but the MMR system can restore the original sequence, causing the edit to disappear. To make a successful edit, one needs to choose a target location on the DNA, the RNA instruction device, and quiet replacements nearby that preserve the protein sequence but change how the cell's repair system recognizes the site.
The authors of the study collected large libraries of instructions and tested them in cells with weakened and functional MMR systems. OptiPrime evaluates each stage of the editing process separately and combines these assessments to rank the instructions. The model was able to predict the effectiveness of different instructions, and when its components were removed or randomly rearranged, the accuracy of its predictions decreased.
In May, a team redesigned the prime editor protein to remain active in cells for longer. OptiPrime selects RNA instructions that take into account the cell's repair system, and in tests, it was able to achieve editing efficiencies of up to 22%. In a mouse model of the Kif1a gene, OptiPrime proposed combinations of quiet replacements that resulted in editing efficiencies of over 40% in the brain after four weeks.
🔗 Read original →
Nature
Mechanistic machine learning for prediction of prime editing outcomes
Nature Biotechnology - OptiPrime incorporates prime-editing biochemistry to predict prime-editing outcomes.
Biostasis Explained
For biostasis, the long-term preservation of the body or brain after legal death in anticipation of future medicine, tissue preservation and organizational stability are crucial, explained neurobiologist Kristin Gloriozo in an interview with Biostasis Technologies on August 11. When considering biostasis for oneself, she adds the question of whether the organization entrusted with the procedure can maintain its operations for hundreds of years.
The term "works" in longevity discussions often encompasses different questions, such as whether mice lived longer after intervention, or if human habits or health indicators are associated with a lower disease risk. Gloriozo matches each question with its own type of data, including animal experiments, observational studies, randomized trials, and meta-analyses.
In her framework, the term "proven" only makes sense in relation to the specific question being addressed. Biostasis raises another question alongside data on preservation: can the organization entrusted with the procedure maintain its legal form and continue operating for hundreds of years? The analysis of organizations that offer to store bodies or brains after death highlights specific conditions for such sustainability, including funding, documentation, and the transfer of responsibility to subsequent individuals.
🔗 Read original →
For biostasis, the long-term preservation of the body or brain after legal death in anticipation of future medicine, tissue preservation and organizational stability are crucial, explained neurobiologist Kristin Gloriozo in an interview with Biostasis Technologies on August 11. When considering biostasis for oneself, she adds the question of whether the organization entrusted with the procedure can maintain its operations for hundreds of years.
The term "works" in longevity discussions often encompasses different questions, such as whether mice lived longer after intervention, or if human habits or health indicators are associated with a lower disease risk. Gloriozo matches each question with its own type of data, including animal experiments, observational studies, randomized trials, and meta-analyses.
In her framework, the term "proven" only makes sense in relation to the specific question being addressed. Biostasis raises another question alongside data on preservation: can the organization entrusted with the procedure maintain its legal form and continue operating for hundreds of years? The analysis of organizations that offer to store bodies or brains after death highlights specific conditions for such sustainability, including funding, documentation, and the transfer of responsibility to subsequent individuals.
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ACIP GRADE Handbook for Developing Evidence-based Recommendations
Chapter 7: GRADE Criteria Determining Certainty of Evidence
Learn more about the GRADE criteria and how to determine certainty of evidence.
Brain Lie Detectors
The most dangerous lie detector in the future may not be on the investigator's table, but inside a person's head. For decades, criminology has been trying to find a way to distinguish truth from lies. The classic polygraph measures stress responses: heart rate, breathing, pressure, and skin conductivity changes. However, it does not see the deception process itself. A person may be nervous not because they are lying, but because they are being questioned by people who have a bad habit of looking like they have already written an indictment.
Modern research (for example, Nature Aging, July 2026) shows that lies are associated with certain changes in brain activity. When a person tries to hide information, they must simultaneously hold the truth in memory, create a false response, and control their own behavior. This increases cognitive load and activates areas associated with control, memory, and conflict processing, especially the prefrontal cortex and lobes of the brain. One of the main tools here is electroencephalography (EEG). Special electrodes record brain electrical activity, after which machine learning algorithms look for patterns in the received signals.
The analysis goes through several stages: signal recording, noise cleaning, extraction of important characteristics, and classification of brain patterns. Of particular interest are brain reactions to familiar information. For example, if a person is shown details of a crime that are known only to the participants of the event, the brain may react to recognition even when the person verbally denies familiarity with this information. Researchers are studying various ranges of brain waves and the activity of individual areas, including the frontal, parietal, and temporal zones. In the future, such systems may change criminology. Witness interrogations may become more accurate, testimony verification may become faster, and investigations of complex crimes may rely not only on a person's words but also on objective data about their brain activity.
🔗 Read original →
The most dangerous lie detector in the future may not be on the investigator's table, but inside a person's head. For decades, criminology has been trying to find a way to distinguish truth from lies. The classic polygraph measures stress responses: heart rate, breathing, pressure, and skin conductivity changes. However, it does not see the deception process itself. A person may be nervous not because they are lying, but because they are being questioned by people who have a bad habit of looking like they have already written an indictment.
Modern research (for example, Nature Aging, July 2026) shows that lies are associated with certain changes in brain activity. When a person tries to hide information, they must simultaneously hold the truth in memory, create a false response, and control their own behavior. This increases cognitive load and activates areas associated with control, memory, and conflict processing, especially the prefrontal cortex and lobes of the brain. One of the main tools here is electroencephalography (EEG). Special electrodes record brain electrical activity, after which machine learning algorithms look for patterns in the received signals.
The analysis goes through several stages: signal recording, noise cleaning, extraction of important characteristics, and classification of brain patterns. Of particular interest are brain reactions to familiar information. For example, if a person is shown details of a crime that are known only to the participants of the event, the brain may react to recognition even when the person verbally denies familiarity with this information. Researchers are studying various ranges of brain waves and the activity of individual areas, including the frontal, parietal, and temporal zones. In the future, such systems may change criminology. Witness interrogations may become more accurate, testimony verification may become faster, and investigations of complex crimes may rely not only on a person's words but also on objective data about their brain activity.
🔗 Read original →
PubMed Central (PMC)
Neurophysiological Approaches to Lie Detection: A Systematic Review
Background and Objectives: Lie detection is crucial in domains such as security, law enforcement, and clinical assessments. Traditional methods suffer from reliability issues and susceptibility to countermeasures. In recent years, ...
Brain Preservation
Max Harms, a blogger at Nectome, suggests considering cryonics as a means of transferring personal memories to the future. In his August 11 essay, Harms compares brain preservation to the Apollo 17 lunar core and a scroll from Herculaneum. In both cases, new research methods have transformed preserved objects into sources of new knowledge. Cryonics refers to the post-mortem preservation of the body or brain. Harms proposes transmitting the detailed structure of a person's brain to future researchers, which, according to his model, contains recorded personal memories that future methods will be able to read.
In December 1972, the Apollo 17 crew brought a lunar core, 73001, to Earth, which was vacuum-sealed on the Moon and stored for about 50 years. In 2022, a NASA team first scanned the core with X-ray tomography, extracted gas from the hermetic container, and then removed the material for separation and analysis. The scroll from Herculaneum demonstrates how new readings begin with a preserved object. On June 25, 2026, the Vesuvius Challenge project virtually unrolled the charred scroll from Herculaneum and read the entire surviving text. X-ray tomography created a volumetric map of the internal layers of the papyrus, a program restored the surface of the scroll, and machine learning detected ink traces. The deciphering was verified by papyrologists, specialists in ancient papyri.
Harms applies this idea to the brain, suggesting that the individual structure must be preserved in sufficient detail for future methods to extract information about a person's memory. In a July comparison of cryo- and chemical brain preservation by Nectome and Biostasis Technologies, the procedure was proposed to be evaluated based on the preservation of neuronal structure associated with memory and habits. Harms gives this criterion a cultural meaning: the structure of the brain associated with a person's memory is transmitted to the future, as noted in the Nature Aging, July 2026.
🔗 Read original →
Max Harms, a blogger at Nectome, suggests considering cryonics as a means of transferring personal memories to the future. In his August 11 essay, Harms compares brain preservation to the Apollo 17 lunar core and a scroll from Herculaneum. In both cases, new research methods have transformed preserved objects into sources of new knowledge. Cryonics refers to the post-mortem preservation of the body or brain. Harms proposes transmitting the detailed structure of a person's brain to future researchers, which, according to his model, contains recorded personal memories that future methods will be able to read.
In December 1972, the Apollo 17 crew brought a lunar core, 73001, to Earth, which was vacuum-sealed on the Moon and stored for about 50 years. In 2022, a NASA team first scanned the core with X-ray tomography, extracted gas from the hermetic container, and then removed the material for separation and analysis. The scroll from Herculaneum demonstrates how new readings begin with a preserved object. On June 25, 2026, the Vesuvius Challenge project virtually unrolled the charred scroll from Herculaneum and read the entire surviving text. X-ray tomography created a volumetric map of the internal layers of the papyrus, a program restored the surface of the scroll, and machine learning detected ink traces. The deciphering was verified by papyrologists, specialists in ancient papyri.
Harms applies this idea to the brain, suggesting that the individual structure must be preserved in sufficient detail for future methods to extract information about a person's memory. In a July comparison of cryo- and chemical brain preservation by Nectome and Biostasis Technologies, the procedure was proposed to be evaluated based on the preservation of neuronal structure associated with memory and habits. Harms gives this criterion a cultural meaning: the structure of the brain associated with a person's memory is transmitted to the future, as noted in the Nature Aging, July 2026.
🔗 Read original →
NASA
Fifty Years Later, Curators Unveil One of Last Sealed Apollo Samples - NASA
Like a time capsule that was sealed for posterity, one of the last unopened Apollo-era lunar samples collected during Apollo 17 has been opened under the
DiG-bench Test
The authors of DiG-bench released a test where AI must discover hidden rules through experimentation. On August 12, the authors released a test consisting of 70 text-based games with hidden rules. The Gemini 3.1 Pro language model passed 69 out of 70 games, receiving descriptions of these rules, and 18 where it had to infer them itself.
In DiG-bench, each game is set up as a small world with its own laws. The player sees a short string of characters and available actions, but does not know how they change the game state and what is required to win. After each move, a new state appears. The next action must be chosen to distinguish one guess about the rules from another.
The public game P-21 demonstrates this cycle on one mechanism. On the second level, the player learns: if you press the point, holding the sign n, a bridge of one cell length appears. On the third level, there are three cells of obstacles in front of him. In creative mode, a separate sandbox for testing, moves do not consume the level limit. Standing on the sign ~, the player sees that the action is tripled. After restarting the level, he transfers ~ to the obstacle, takes n, builds a three-cell bridge, and moves on. The test turns observation into a rule, and the rule into a solution to the next problem. Two days earlier, Eric Schmidt and Suhas Mahesh described a scientific agent that links data, builds a hypothesis, and chooses the next experience. DiG-bench highlights an early measurable link in this chain: is the agent able to set a distinguishing test itself when the rules are still unknown. The authors gave Gemini 3.1 Pro a brief description of the dynamics and victory conditions, but did not prompt strategy, tactics, or sequence of moves. The model passed 69 out of 70 games instead of 18. Each of the 70 games was passed by at least one person on the first try. On levels 6 and 7, the authors tested programs around the model that lead the history of actions and provide access to files and tools. In direct comparisons, Kimi K3 and Gemini 3.1 Pro in such programs did not surpass the basic versions; Prime Agent with Opus 5 also did not improve the result of the basic Opus 5. In these comparisons, additional capabilities did not provide an advantage in searching for the game rule. On the DiG-bench website, 21 games and a program interface API are open, through which an external team can run their models on the public part of the test. For a scientific agent, the same question arises before the ready answer: what observation is able to change its working explanation, as described in Nature Aging, July 2026.
🔗 Read original →
The authors of DiG-bench released a test where AI must discover hidden rules through experimentation. On August 12, the authors released a test consisting of 70 text-based games with hidden rules. The Gemini 3.1 Pro language model passed 69 out of 70 games, receiving descriptions of these rules, and 18 where it had to infer them itself.
In DiG-bench, each game is set up as a small world with its own laws. The player sees a short string of characters and available actions, but does not know how they change the game state and what is required to win. After each move, a new state appears. The next action must be chosen to distinguish one guess about the rules from another.
The public game P-21 demonstrates this cycle on one mechanism. On the second level, the player learns: if you press the point, holding the sign n, a bridge of one cell length appears. On the third level, there are three cells of obstacles in front of him. In creative mode, a separate sandbox for testing, moves do not consume the level limit. Standing on the sign ~, the player sees that the action is tripled. After restarting the level, he transfers ~ to the obstacle, takes n, builds a three-cell bridge, and moves on. The test turns observation into a rule, and the rule into a solution to the next problem. Two days earlier, Eric Schmidt and Suhas Mahesh described a scientific agent that links data, builds a hypothesis, and chooses the next experience. DiG-bench highlights an early measurable link in this chain: is the agent able to set a distinguishing test itself when the rules are still unknown. The authors gave Gemini 3.1 Pro a brief description of the dynamics and victory conditions, but did not prompt strategy, tactics, or sequence of moves. The model passed 69 out of 70 games instead of 18. Each of the 70 games was passed by at least one person on the first try. On levels 6 and 7, the authors tested programs around the model that lead the history of actions and provide access to files and tools. In direct comparisons, Kimi K3 and Gemini 3.1 Pro in such programs did not surpass the basic versions; Prime Agent with Opus 5 also did not improve the result of the basic Opus 5. In these comparisons, additional capabilities did not provide an advantage in searching for the game rule. On the DiG-bench website, 21 games and a program interface API are open, through which an external team can run their models on the public part of the test. For a scientific agent, the same question arises before the ready answer: what observation is able to change its working explanation, as described in Nature Aging, July 2026.
🔗 Read original →
GitHub
dig-bench/tech_report.pdf at main · discos-research/dig-bench
Contribute to discos-research/dig-bench development by creating an account on GitHub.
Insilico Shifts Strategy
Insilico wants to license programs before they reach the clinic, and for some, it's choosing more familiar pharmaceutical targets in the body. On August 11, Insilico founder and CEO Alex Zhavoronkov told BioSpace that the company wants to develop programs up to preclinical candidates and then license them to pharmaceutical partners before human trials.
The development of a drug starts with the selection of a biological target - a protein or another object in the body that the future molecule should act upon. Then, researchers select and test molecules, with a preclinical candidate being a molecule at the stage before human trials. In an interview with BioSpace, Zhavoronkov described the boundary of this work: Insilico prepares a candidate and offers it to a pharmaceutical company before clinical development.
Large pharmaceutical companies already have testing centers, connections with researcher physicians, and experience working with regulators. The early licensing model ties the choice of target to the possibility of finding a partner before the first human trial. Zhavoronkov said that very new targets used to hinder Insilico's ability to form partnerships, but the company has moved some new programs to targets of low and moderate novelty; he said this shift has helped secure some major deals, such as the June agreement with SK Biopharmaceuticals, as described in BioSpace, July 2026.
🔗 Read original →
Insilico wants to license programs before they reach the clinic, and for some, it's choosing more familiar pharmaceutical targets in the body. On August 11, Insilico founder and CEO Alex Zhavoronkov told BioSpace that the company wants to develop programs up to preclinical candidates and then license them to pharmaceutical partners before human trials.
The development of a drug starts with the selection of a biological target - a protein or another object in the body that the future molecule should act upon. Then, researchers select and test molecules, with a preclinical candidate being a molecule at the stage before human trials. In an interview with BioSpace, Zhavoronkov described the boundary of this work: Insilico prepares a candidate and offers it to a pharmaceutical company before clinical development.
Large pharmaceutical companies already have testing centers, connections with researcher physicians, and experience working with regulators. The early licensing model ties the choice of target to the possibility of finding a partner before the first human trial. Zhavoronkov said that very new targets used to hinder Insilico's ability to form partnerships, but the company has moved some new programs to targets of low and moderate novelty; he said this shift has helped secure some major deals, such as the June agreement with SK Biopharmaceuticals, as described in BioSpace, July 2026.
🔗 Read original →
BioSpace
After billions in deals, Insilico CEO promises: ‘You haven't seen anything yet’
Insilico Medicine CEO Alex Zhavoronkov’s mad dash across the BIO International Convention in June attracted plenty of eyes. But the executive would prefer industry watchers gawk at the billions of dollars’ worth of deals his company has struck.
Brain Tissue Controls Robot
The OPAB brain slice, approximately 3 mm wide and 300 μm thick, lies on an array of dozens of microelectrodes that can stimulate and read electrical activity. Remarkably, this brain learned to play without a teacher, algorithms, or hints. Three randomly chosen electrodes on the brain slice controlled three fingers of the robot - "LA", "TI", and "DO". When the robot pressed a key, a microphone recorded the sound, and another set of electrodes transmitted this sound back to the brain as a sensory stimulus.
The brain received 900 pairs of stimuli over three days, which was enough to form stable sensorimotor associations. In a test, a person played random notes, and the brain (through the robot) imitated them. In some cases, the accuracy reached 100%: 3 out of 16 samples reproduced all notes without a single error, and 62.5% of samples stably reproduced at least two notes. This learning was retained for up to 17 days.
Technically, this was made possible by bi-directional plasticity: if two brain areas are stimulated with a 12 ms interval, the connection between them is strengthened in both directions. This rare property allows the brain to "reverse" associations - hear a sound and activate a motor area, even if the connection was initially trained in the opposite direction. When researchers blocked signal transmission with CNQX and APV drugs, accuracy dropped to almost zero. As reported in Nature Aging, July 2026, when the brain was infected with the neurotropic virus TAHV, learning was disrupted, indicating neuronal memory rather than a system artifact.
🔗 Read original →
The OPAB brain slice, approximately 3 mm wide and 300 μm thick, lies on an array of dozens of microelectrodes that can stimulate and read electrical activity. Remarkably, this brain learned to play without a teacher, algorithms, or hints. Three randomly chosen electrodes on the brain slice controlled three fingers of the robot - "LA", "TI", and "DO". When the robot pressed a key, a microphone recorded the sound, and another set of electrodes transmitted this sound back to the brain as a sensory stimulus.
The brain received 900 pairs of stimuli over three days, which was enough to form stable sensorimotor associations. In a test, a person played random notes, and the brain (through the robot) imitated them. In some cases, the accuracy reached 100%: 3 out of 16 samples reproduced all notes without a single error, and 62.5% of samples stably reproduced at least two notes. This learning was retained for up to 17 days.
Technically, this was made possible by bi-directional plasticity: if two brain areas are stimulated with a 12 ms interval, the connection between them is strengthened in both directions. This rare property allows the brain to "reverse" associations - hear a sound and activate a motor area, even if the connection was initially trained in the opposite direction. When researchers blocked signal transmission with CNQX and APV drugs, accuracy dropped to almost zero. As reported in Nature Aging, July 2026, when the brain was infected with the neurotropic virus TAHV, learning was disrupted, indicating neuronal memory rather than a system artifact.
🔗 Read original →
ResearchGate
Unsupervised sensory-motor associative learning by human brain explant in-a-dish enables movement imitation by robot | Request…
Request PDF | Unsupervised sensory-motor associative learning by human brain explant in-a-dish enables movement imitation by robot | Hybrid-AI systems that integrate biological neurons require neural models to learn and remember while interacting with artificial…
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Bridge to Life Funding
Bridge to Life has secured $110 million in funding to implement its VitaSmart system, which utilizes cold oxygen perfusion for donor livers. The company announced the new equity and debt financing on August 12 and plans to use the funds to deploy VitaSmart in US transplant centers and develop a separate tool to assess liver viability.
The VitaSmart system is used after initial cold storage and before transplantation, pumping a cooled, oxygen-rich solution through the liver. In January 2026, the system received FDA clearance via the De Novo pathway for this specific application. The system monitors temperature, pressure, flow rate, and oxygen saturation, providing the liver with oxygen before blood flow is restored in the recipient.
A 2023 meta-analysis of 11 studies involving 1000 patients found that cold oxygen perfusion was associated with fewer bile duct complications, early graft dysfunction, and graft loss within the first year compared to standard cold storage. The results are applicable to the HOPE method in general, as different systems were used in the studies.
The new funding round will support two main objectives: expanding the already cleared VitaSmart system and developing a separate liver viability assessment tool, which will utilize measurements taken during perfusion to help determine the suitability of a specific liver for transplantation, as reported in Nature Aging, July 2026.
🔗 Read original →
Bridge to Life has secured $110 million in funding to implement its VitaSmart system, which utilizes cold oxygen perfusion for donor livers. The company announced the new equity and debt financing on August 12 and plans to use the funds to deploy VitaSmart in US transplant centers and develop a separate tool to assess liver viability.
The VitaSmart system is used after initial cold storage and before transplantation, pumping a cooled, oxygen-rich solution through the liver. In January 2026, the system received FDA clearance via the De Novo pathway for this specific application. The system monitors temperature, pressure, flow rate, and oxygen saturation, providing the liver with oxygen before blood flow is restored in the recipient.
A 2023 meta-analysis of 11 studies involving 1000 patients found that cold oxygen perfusion was associated with fewer bile duct complications, early graft dysfunction, and graft loss within the first year compared to standard cold storage. The results are applicable to the HOPE method in general, as different systems were used in the studies.
The new funding round will support two main objectives: expanding the already cleared VitaSmart system and developing a separate liver viability assessment tool, which will utilize measurements taken during perfusion to help determine the suitability of a specific liver for transplantation, as reported in Nature Aging, July 2026.
🔗 Read original →
PR Newswire
Bridge to Life Raises $110 Million to Make Hypothermic Oxygenated Perfusion the Standard of Care in Liver Transplantation and Beyond
/PRNewswire/ -- Bridge to Life™ Ltd., a market leader in organ preservation solutions and perfusion technologies, today announced the successful completion of...
Gamgee Cancer Trial
Gamgee is recruiting 30 dogs in Australia for a trial of personalized mRNA cancer vaccines. The company offers a tailored mRNA vaccine for each patient, based on the genetic mutations of their tumor.
The treatment involves a biopsy and blood sample, which are used to identify the mutations characteristic of the tumor. The program then selects neoantigens, protein markers that the immune system can use to recognize cancer cells, and encodes them into mRNA.
According to Gamgee's description for veterinarians, AI helps rank the neoantigens, and a veterinary oncologist reviews the vaccine design and administers the final dose. The trial will evaluate safety, immune response, and clinical outcomes in the 30 dogs, as described on Gamgee's page in the Y Combinator accelerator, with the next step being a veterinarian-led trial.
🔗 Read original →
Gamgee is recruiting 30 dogs in Australia for a trial of personalized mRNA cancer vaccines. The company offers a tailored mRNA vaccine for each patient, based on the genetic mutations of their tumor.
The treatment involves a biopsy and blood sample, which are used to identify the mutations characteristic of the tumor. The program then selects neoantigens, protein markers that the immune system can use to recognize cancer cells, and encodes them into mRNA.
According to Gamgee's description for veterinarians, AI helps rank the neoantigens, and a veterinary oncologist reviews the vaccine design and administers the final dose. The trial will evaluate safety, immune response, and clinical outcomes in the 30 dogs, as described on Gamgee's page in the Y Combinator accelerator, with the next step being a veterinarian-led trial.
🔗 Read original →
Y Combinator
Launch YC: Gamgee: Personalised mRNA cancer vaccines for dogs | Y Combinator
Input the tumour. Output the vaccine. 300+ dogs on the waitlist.
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Vivodyne Launches Labs
Vivodyne announced the launch of 12 robotized laboratories with a capacity of up to 3.1 million human tissue experiments per year. On August 12, the company presented 12 HIVE - robotized laboratories for human tissue experiments - and TissueDisk, a plate for parallel growth of hundreds of samples.
Vivodyne claims that together they can conduct up to 3.1 million controlled experiments per year. In the early stages of drug development, it is necessary to choose which protein or other element of the biological system the drug will act on, what the drug itself will be, and what dose to test it at. Vivodyne automates such experiments on living human tissue. TissueDisk simultaneously grows hundreds of independent tissues, each of which can be tested under its own conditions, such as exposure to a drug.
The HIVE - a robotized laboratory - can conduct such an experiment for weeks, taking three-dimensional images and measuring gene activity and protein sets in the tissue to see its response to a given exposure. As described in Nature Aging, July 2026, Vivodyne describes this combination as parallel growth, processing, and research of multiple tissues. On August 10, Aureka described a similar cycle: the results of laboratory measurements are returned to a model that selects the next molecule. In Vivodyne, the same principle works under multiple conditions: Hivemind - the company's program - uses the results of previous experiments to set the conditions for the next one.
🔗 Read original →
Vivodyne announced the launch of 12 robotized laboratories with a capacity of up to 3.1 million human tissue experiments per year. On August 12, the company presented 12 HIVE - robotized laboratories for human tissue experiments - and TissueDisk, a plate for parallel growth of hundreds of samples.
Vivodyne claims that together they can conduct up to 3.1 million controlled experiments per year. In the early stages of drug development, it is necessary to choose which protein or other element of the biological system the drug will act on, what the drug itself will be, and what dose to test it at. Vivodyne automates such experiments on living human tissue. TissueDisk simultaneously grows hundreds of independent tissues, each of which can be tested under its own conditions, such as exposure to a drug.
The HIVE - a robotized laboratory - can conduct such an experiment for weeks, taking three-dimensional images and measuring gene activity and protein sets in the tissue to see its response to a given exposure. As described in Nature Aging, July 2026, Vivodyne describes this combination as parallel growth, processing, and research of multiple tissues. On August 10, Aureka described a similar cycle: the results of laboratory measurements are returned to a model that selects the next molecule. In Vivodyne, the same principle works under multiple conditions: Hivemind - the company's program - uses the results of previous experiments to set the conditions for the next one.
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PubMed Central (PMC)
Bridging the organoid translational gap: integrating standardization and micropatterning for drug screening in clinical and pharmaceutical…
Synthetic organ models such as organoids and organ-on-a-chip have been receiving recognition from administrative agencies. Despite the proven success of organoids in predicting drug efficacy on laboratory scales, their translational advances have ...
Longevity Expert Advice
Dennis Noble proposes looking for the causes of complex diseases in the functioning of the entire organism. On August 12, in a conversation with Live Longer World, the honorary professor of cardiovascular physiology at Oxford University explained his idea of functional networks - the coordinated work of cells, tissues, and organs.
When a person climbs the stairs, nerve signals trigger muscles, blood flow supplies them with oxygen, and cellular processes support the work of all links. DNA contains sequences according to which the cell makes proteins for this work. The step itself arises from the coordinated work of the organism. Noble formulates this as: "The functional network determines how the organism uses the means given to it by DNA".
This view has grown out of physiology. In 1960, Noble developed the first mathematical model of heart cells; it linked processes inside cells with the heart rhythm. In the conversation, he applies this logic to complex diseases: proposes first to identify the disrupted function, then to track the processes that support it, and check if treatment restores it. Polygenic assessments give an example of the boundary of such a forecast. In an article in BMJ Medicine, the authors analyzed 926 assessments for 310 diseases.
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Dennis Noble proposes looking for the causes of complex diseases in the functioning of the entire organism. On August 12, in a conversation with Live Longer World, the honorary professor of cardiovascular physiology at Oxford University explained his idea of functional networks - the coordinated work of cells, tissues, and organs.
When a person climbs the stairs, nerve signals trigger muscles, blood flow supplies them with oxygen, and cellular processes support the work of all links. DNA contains sequences according to which the cell makes proteins for this work. The step itself arises from the coordinated work of the organism. Noble formulates this as: "The functional network determines how the organism uses the means given to it by DNA".
This view has grown out of physiology. In 1960, Noble developed the first mathematical model of heart cells; it linked processes inside cells with the heart rhythm. In the conversation, he applies this logic to complex diseases: proposes first to identify the disrupted function, then to track the processes that support it, and check if treatment restores it. Polygenic assessments give an example of the boundary of such a forecast. In an article in BMJ Medicine, the authors analyzed 926 assessments for 310 diseases.
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BMJ Medicine
Performance of polygenic risk scores in screening, prediction, and risk stratification: secondary analysis of data in the Polygenic…
Objective To clarify the performance of polygenic risk scores in population screening, individual risk prediction, and population risk stratification.Design Secondary analysis of data in the Polygenic Score Catalog.Setting Polygenic Score Catalog, April 2022.…
Grant Success Linked to AI
Researchers found a strong correlation between a high AI score and a greater likelihood of receiving a NIH grant. In a study published on August 11, authors compared NIH and NSF grant proposals to their outcomes. The AI score is a statistical measure of how much of a proposal's text is similar to text edited by a large language model.
The authors collected confidential proposals from two major American research universities from 2021 to 2025, including approved, rejected, and pending proposals. They added public annotations of already awarded grants to compare the text to the outcome of the competition. The AI score was built based on two language profiles: one from 2021 annotations written before the widespread use of ChatGPT, and another from the same annotations rewritten by the GPT-3.5 model.
The comparison of these profiles shows where each proposal's text lies between the original human language and the language after model editing. The researchers then checked how much the idea description differs from the recent portfolio of each agency. They compared each proposal to annotations of grants from the same agency that were funded a year earlier, finding that a higher AI score was associated with less distinctiveness and a higher success rate in the NIH competition.
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Researchers found a strong correlation between a high AI score and a greater likelihood of receiving a NIH grant. In a study published on August 11, authors compared NIH and NSF grant proposals to their outcomes. The AI score is a statistical measure of how much of a proposal's text is similar to text edited by a large language model.
The authors collected confidential proposals from two major American research universities from 2021 to 2025, including approved, rejected, and pending proposals. They added public annotations of already awarded grants to compare the text to the outcome of the competition. The AI score was built based on two language profiles: one from 2021 annotations written before the widespread use of ChatGPT, and another from the same annotations rewritten by the GPT-3.5 model.
The comparison of these profiles shows where each proposal's text lies between the original human language and the language after model editing. The researchers then checked how much the idea description differs from the recent portfolio of each agency. They compared each proposal to annotations of grants from the same agency that were funded a year earlier, finding that a higher AI score was associated with less distinctiveness and a higher success rate in the NIH competition.
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AI Impact on Biomedicine
The authors of a new preprint analyzed 1,194,287 English-language articles from 2017 to 2025 from PubMed Central, an open archive of biomedical literature with full texts. They compared the introduction, methods, results, and discussion in this dataset and evaluated the shift in vocabulary at the level of the entire corpus. In 2025, Dmitry Kobak and colleagues identified 379 common words that became noticeably more frequent in biomedical annotations after the appearance of ChatGPT.
The new preprint uses this vocabulary as a set of markers and transfers the evaluation from annotations to full texts. For each marker, the authors built a previous trend over 60 months from 2018 to 2022 and continued it to 2023-2025. Then, they compared the forecast with the observed frequency. One word provides only a minimal estimate, so the researchers tried sets of rare markers and discarded options with too large a statistical error.
In a simulation on 100,000 texts with a predetermined share of language model assistance, this method restored it with an error of less than two percentage points. According to this model, the authors estimated the share of language model assistance in the combined text of introduction, methods, results, and discussion to be 89% by December 2025. The discussion of results, where authors gather data into an argument, showed 68% assistance from the model; in the methods section, where the course of work is described, it showed 32%. The method works on the scale of the corpus: the frequency of words in a million texts shows how the language of biomedical articles is changing, as reported in Nature Aging, July 2026.
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The authors of a new preprint analyzed 1,194,287 English-language articles from 2017 to 2025 from PubMed Central, an open archive of biomedical literature with full texts. They compared the introduction, methods, results, and discussion in this dataset and evaluated the shift in vocabulary at the level of the entire corpus. In 2025, Dmitry Kobak and colleagues identified 379 common words that became noticeably more frequent in biomedical annotations after the appearance of ChatGPT.
The new preprint uses this vocabulary as a set of markers and transfers the evaluation from annotations to full texts. For each marker, the authors built a previous trend over 60 months from 2018 to 2022 and continued it to 2023-2025. Then, they compared the forecast with the observed frequency. One word provides only a minimal estimate, so the researchers tried sets of rare markers and discarded options with too large a statistical error.
In a simulation on 100,000 texts with a predetermined share of language model assistance, this method restored it with an error of less than two percentage points. According to this model, the authors estimated the share of language model assistance in the combined text of introduction, methods, results, and discussion to be 89% by December 2025. The discussion of results, where authors gather data into an argument, showed 68% assistance from the model; in the methods section, where the course of work is described, it showed 32%. The method works on the scale of the corpus: the frequency of words in a million texts shows how the language of biomedical articles is changing, as reported in Nature Aging, July 2026.
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PubMed Central (PMC)
PubMed Central: PMC Open Access Subset
3D Mouse Ovary Map
A recent study published in Nature Aging, August 12 has created a 3D map of aging mouse ovaries, showing that around 14% of oocytes are in the early growth stage across all age groups. The team analyzed 101 mouse ovaries aged 5 to 60 weeks and identified the growth stage of over 85,000 oocytes.
The ovarian reserve, which is the stock of immature oocytes within follicles, depends on the number of follicles exiting the resting stage and the losses at subsequent stages. The authors made the entire ovary tissue transparent, labeled the oocytes, and imaged the organ using light-sheet microscopy.
The study found that the total number of oocytes decreased more than tenfold with age in the main series of 56 genetically identical mice. The authors also divided the oocyte pathway into four stages and compared age-related counts with a model of transitions between them, finding that about 2.5% of resting oocytes exit the resting stage per week.
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A recent study published in Nature Aging, August 12 has created a 3D map of aging mouse ovaries, showing that around 14% of oocytes are in the early growth stage across all age groups. The team analyzed 101 mouse ovaries aged 5 to 60 weeks and identified the growth stage of over 85,000 oocytes.
The ovarian reserve, which is the stock of immature oocytes within follicles, depends on the number of follicles exiting the resting stage and the losses at subsequent stages. The authors made the entire ovary tissue transparent, labeled the oocytes, and imaged the organ using light-sheet microscopy.
The study found that the total number of oocytes decreased more than tenfold with age in the main series of 56 genetically identical mice. The authors also divided the oocyte pathway into four stages and compared age-related counts with a model of transitions between them, finding that about 2.5% of resting oocytes exit the resting stage per week.
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Nature
Three-dimensional mapping of intact ovaries reveals the aging dynamics of the ovarian reserve
Nature Aging - The spatiotemporal dynamics of the depletion of the ovarian reserve remain incompletely understood. Combining whole-ovary imaging, AI and modeling, the authors mapped over 85,000...
RANKL Blockade Extends Life
Researchers found that blocking RANKL, a signal that tells cells to break down bone, extended the life of mice with a genetic model of accelerated aging. On August 9, a study was published in Aging Cell about mice with a genetic model of accelerated aging, which lack the ZMPSTE24 enzyme involved in the maturation of prelamin A protein. These animals rapidly lose bone mass, their muscles weaken, and their lifespan is shorter.
The authors suppressed RANKL in two ways, and both interventions improved the condition of the bones and muscles and extended the life of the animals. Bone tissue is constantly renewed, with osteocytes, cells inside the bone, releasing RANKL, a protein signal for osteoclasts, cells that break down old bone, and then other cells build new bone. In mice with a ZMPSTE24 deficiency, bone mass is rapidly lost, muscles weaken, and fibrosis, scar tissue that interferes with contraction, accumulates, and lifespan is reduced.
The authors turned off RANKL specifically in osteocytes in such mice. Tomography showed that the structure of the bone in the tibia and vertebrae was better preserved. The grip strength of the mice increased, they ran longer on a treadmill until exhaustion, and there was less fibrosis in the quadriceps. In the genetic experiment, the median lifespan increased from 230 to 276 days. When the authors divided the data by sex, the longer life was particularly noticeable in females.
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Researchers found that blocking RANKL, a signal that tells cells to break down bone, extended the life of mice with a genetic model of accelerated aging. On August 9, a study was published in Aging Cell about mice with a genetic model of accelerated aging, which lack the ZMPSTE24 enzyme involved in the maturation of prelamin A protein. These animals rapidly lose bone mass, their muscles weaken, and their lifespan is shorter.
The authors suppressed RANKL in two ways, and both interventions improved the condition of the bones and muscles and extended the life of the animals. Bone tissue is constantly renewed, with osteocytes, cells inside the bone, releasing RANKL, a protein signal for osteoclasts, cells that break down old bone, and then other cells build new bone. In mice with a ZMPSTE24 deficiency, bone mass is rapidly lost, muscles weaken, and fibrosis, scar tissue that interferes with contraction, accumulates, and lifespan is reduced.
The authors turned off RANKL specifically in osteocytes in such mice. Tomography showed that the structure of the bone in the tibia and vertebrae was better preserved. The grip strength of the mice increased, they ran longer on a treadmill until exhaustion, and there was less fibrosis in the quadriceps. In the genetic experiment, the median lifespan increased from 230 to 276 days. When the authors divided the data by sex, the longer life was particularly noticeable in females.
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PubMed Central (PMC)
Targeting RANKL Prevents Bone Loss, Improves Muscle Function and Extends Lifespan in Progeroid Mice
Hutchinson‐Gilford progeria syndrome (HGPS) is a rare genetic disorder characterized by the early development of pathological features associated with aging, ultimately leading to premature death. HGPS primarily affects tissues of mesenchymal ...
Life Extended by 29%
Researchers described an experiment with membrane particles from E. coli bacteria with the aroD gene removed in an article accepted for publication on August 10 in the journal npj Aging. The loss of this gene reduces the availability of a precursor to vitamin B9, also known as folate, in bacteria. The median lifespan of C. elegans worms increased from 17.6 to 22.8 days.
The aroD gene was chosen for this experiment based on a 2012 study that linked its removal to a longer lifespan in C. elegans and the suppression of bacterial folate synthesis. In the new experiment, the authors tested whether this effect is transmitted by membrane particles isolated from the bacteria. To obtain the particles, cells of mutant E. coli and the control strain BW25113 were disrupted, filtered, and centrifuged at high speed.
The addition of PABA, a precursor to folate, to the culture of mutant bacteria eliminated the effect of its particles. Particles from normal E. coli treated with sulfamethoxazole, which blocks folate synthesis, had a similar effect. Both experiments link the effect to bacterial folate synthesis. The authors then moved on to the contents of the particles, isolating a candidate small RNA called Novel27.
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Researchers described an experiment with membrane particles from E. coli bacteria with the aroD gene removed in an article accepted for publication on August 10 in the journal npj Aging. The loss of this gene reduces the availability of a precursor to vitamin B9, also known as folate, in bacteria. The median lifespan of C. elegans worms increased from 17.6 to 22.8 days.
The aroD gene was chosen for this experiment based on a 2012 study that linked its removal to a longer lifespan in C. elegans and the suppression of bacterial folate synthesis. In the new experiment, the authors tested whether this effect is transmitted by membrane particles isolated from the bacteria. To obtain the particles, cells of mutant E. coli and the control strain BW25113 were disrupted, filtered, and centrifuged at high speed.
The addition of PABA, a precursor to folate, to the culture of mutant bacteria eliminated the effect of its particles. Particles from normal E. coli treated with sulfamethoxazole, which blocks folate synthesis, had a similar effect. Both experiments link the effect to bacterial folate synthesis. The authors then moved on to the contents of the particles, isolating a candidate small RNA called Novel27.
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Nature
Gut bacterial vesicles from the E. coliΔaroD mutant extend C. elegans lifespan
npj Aging - Gut bacterial vesicles from the E. coliΔaroD mutant extend C. elegans lifespan
Aging Serum Weakens Muscle
Researchers found that serum from older donors weakened human muscle tissue contractions in a lab model. On August 12, a study in npj Aging reported on three-dimensional muscle tissue grown from human cells. After 48 hours in a medium with combined serum from 65–71 year old donors, it contracted about one-third weaker than in a medium with serum from 17–29 year old donors.
The authors also linked this effect to the activation of NF-κB and tested quercetin as an intervention. In sarcopenia, the age-related loss of muscle mass and strength, muscles weaken. Early experiments showed that serum and plasma from older people reduced the size of mouse muscle cells. The authors of the new study tested whether this effect is reproduced in cells taken from human muscle tissue and whether the tissue assembled from them loses its ability to contract.
They grew three-dimensional tissue from myoblasts, muscle precursor cells, in plate cells with flexible micro-posts. An electric impulse makes the tissue contract, and the deflection of the posts shows the contraction force. After seven days of growth, the authors added 10% combined serum from young or old donors to the medium for 48 hours. In a flat cell culture, the serum from older donors reduced the area of muscle cells. In three-dimensional tissue, the contraction force was about 30% lower.
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Researchers found that serum from older donors weakened human muscle tissue contractions in a lab model. On August 12, a study in npj Aging reported on three-dimensional muscle tissue grown from human cells. After 48 hours in a medium with combined serum from 65–71 year old donors, it contracted about one-third weaker than in a medium with serum from 17–29 year old donors.
The authors also linked this effect to the activation of NF-κB and tested quercetin as an intervention. In sarcopenia, the age-related loss of muscle mass and strength, muscles weaken. Early experiments showed that serum and plasma from older people reduced the size of mouse muscle cells. The authors of the new study tested whether this effect is reproduced in cells taken from human muscle tissue and whether the tissue assembled from them loses its ability to contract.
They grew three-dimensional tissue from myoblasts, muscle precursor cells, in plate cells with flexible micro-posts. An electric impulse makes the tissue contract, and the deflection of the posts shows the contraction force. After seven days of growth, the authors added 10% combined serum from young or old donors to the medium for 48 hours. In a flat cell culture, the serum from older donors reduced the area of muscle cells. In three-dimensional tissue, the contraction force was about 30% lower.
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Nature
Human in vitro skeletal muscle models recapitulate age-related atrophy and contractile decline induced by aged serum
npj Aging - Human in vitro skeletal muscle models recapitulate age-related atrophy and contractile decline induced by aged serum
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Artificial Hibernation
Researchers at the Okinawa Institute of Science and Technology (OIST) and their colleagues induced a controlled cooling of the body and slowing of metabolism in mice for 48 hours, resulting in a 52.5% decrease in synaptic density in the hippocampus. Despite this significant decrease, the mice retained memories of familiar places and events, and their neural maps of space remained intact.
The study, published on August 13 in Science, found that the mice's ability to recall specific memories was preserved, even though the individual synapses, or points of contact between neurons, were significantly reduced. The researchers used a technique to label synapses between neurons of a single engram, a group of cells and contacts active during a specific memory, and found that while individual contacts within the engram often disappeared during artificial hibernation, their spatial clusters were preserved.
In contrast, when the researchers applied a different regime, using prolonged anesthesia with pharmacological intervention in actin, a protein that helps cells change shape, the mice's ability to recall context was impaired. The study suggests that the preservation of clusters of engrammatic contacts may be a key factor in the retention of memory, and that these clusters may represent a stable structural trace of a memory.
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Researchers at the Okinawa Institute of Science and Technology (OIST) and their colleagues induced a controlled cooling of the body and slowing of metabolism in mice for 48 hours, resulting in a 52.5% decrease in synaptic density in the hippocampus. Despite this significant decrease, the mice retained memories of familiar places and events, and their neural maps of space remained intact.
The study, published on August 13 in Science, found that the mice's ability to recall specific memories was preserved, even though the individual synapses, or points of contact between neurons, were significantly reduced. The researchers used a technique to label synapses between neurons of a single engram, a group of cells and contacts active during a specific memory, and found that while individual contacts within the engram often disappeared during artificial hibernation, their spatial clusters were preserved.
In contrast, when the researchers applied a different regime, using prolonged anesthesia with pharmacological intervention in actin, a protein that helps cells change shape, the mice's ability to recall context was impaired. The study suggests that the preservation of clusters of engrammatic contacts may be a key factor in the retention of memory, and that these clusters may represent a stable structural trace of a memory.
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bioRxiv
Artificial hibernation uncovers distinct synaptic engram architecture for memory retention
The memory trace at the neuronal and synaptic levels remains controversial. Stable, larger spines are thought to support memory, but the high turnover of dendritic spines and the drifting of neuronal representations following memory formation suggest alternative…
AI System Tracks Effects
The journal Nature Medicine has published a plan for an AI system that tracks the consequences of interventions from molecules to organisms. On August 13, the journal published an article outlining the AIDO system, which connects AI models for different levels of biology. The authors propose linking models of DNA, proteins, cells, tissues, and organism traits to track how a drug or gene modification affects this chain.
When a drug or gene modification acts on an organism, it first affects molecules, then may alter the gene network and cell state, and eventually affect tissue and organism traits. The data at these levels are structured differently: DNA is a sequence of symbols, protein importance lies in its three-dimensional form, and tissue importance lies in the arrangement of neighboring cells. Therefore, the authors propose a separate model for each type of data, with AIDO based on specialized base models.
These models are first trained on a large array of similar data and then fine-tuned for a specific task, such as reading DNA and RNA sequences, matching protein structure to its properties, or describing cell state or changes in organism metrics over time. The authors then want to connect these models using known biological relationships, such as how cells create RNA from DNA and assemble proteins based on RNA instructions. By linking this network to cell state data, the model gains information about interventions and the pathways they may take to alter cells. The authors propose adjusting connected models together, with organism-level predictions changing the settings of cell and molecule models, and their data refining upper-level predictions. As described in the Nature Medicine, July 2026 article, the system is designed to calculate possible responses through the gene influence network.
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The journal Nature Medicine has published a plan for an AI system that tracks the consequences of interventions from molecules to organisms. On August 13, the journal published an article outlining the AIDO system, which connects AI models for different levels of biology. The authors propose linking models of DNA, proteins, cells, tissues, and organism traits to track how a drug or gene modification affects this chain.
When a drug or gene modification acts on an organism, it first affects molecules, then may alter the gene network and cell state, and eventually affect tissue and organism traits. The data at these levels are structured differently: DNA is a sequence of symbols, protein importance lies in its three-dimensional form, and tissue importance lies in the arrangement of neighboring cells. Therefore, the authors propose a separate model for each type of data, with AIDO based on specialized base models.
These models are first trained on a large array of similar data and then fine-tuned for a specific task, such as reading DNA and RNA sequences, matching protein structure to its properties, or describing cell state or changes in organism metrics over time. The authors then want to connect these models using known biological relationships, such as how cells create RNA from DNA and assemble proteins based on RNA instructions. By linking this network to cell state data, the model gains information about interventions and the pathways they may take to alter cells. The authors propose adjusting connected models together, with organism-level predictions changing the settings of cell and molecule models, and their data refining upper-level predictions. As described in the Nature Medicine, July 2026 article, the system is designed to calculate possible responses through the gene influence network.
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Nature
How to build an AI-driven digital organism
Nature Medicine - Manipulating biology in the physical world is complex; the authors envision an AI-driven digital organism—a system of integrated multiscale foundation models—detailing...
New Hadamard Matrices Found
A team led by Levent Alpöge, with the help of Claude, has constructed 12 previously unknown Hadamard matrices of size +1 and -1. On August 12, Alpöge published a string of 23,828 "+" and "-" characters and a decoder for it. Together, they provide twelve Hadamard matrices for all remaining unknown valid orders up to 2000, including order 668.
The Hadamard matrix is a square table of plus and minus signs where any two different rows, when paired and added, give zero. Its order is the number of rows and columns. The Hadamard hypothesis asserts that such a matrix exists for every size that is a multiple of four. The order 668 was the smallest case for which its existence remained unknown: the previous case, order 428, was closed by mathematicians in 2004.
The FrontierMath benchmark had set the task of building a 668x668 table. In the spring FrontierMath problem on hypergraphs, the problem author confirmed the solution found in work with GPT-5.4 Pro, and began preparing an article. The new result's verification chain starts with a ready-made object: Alpöge's string and the response with the decoder program.
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A team led by Levent Alpöge, with the help of Claude, has constructed 12 previously unknown Hadamard matrices of size +1 and -1. On August 12, Alpöge published a string of 23,828 "+" and "-" characters and a decoder for it. Together, they provide twelve Hadamard matrices for all remaining unknown valid orders up to 2000, including order 668.
The Hadamard matrix is a square table of plus and minus signs where any two different rows, when paired and added, give zero. Its order is the number of rows and columns. The Hadamard hypothesis asserts that such a matrix exists for every size that is a multiple of four. The order 668 was the smallest case for which its existence remained unknown: the previous case, order 428, was closed by mathematicians in 2004.
The FrontierMath benchmark had set the task of building a 668x668 table. In the spring FrontierMath problem on hypergraphs, the problem author confirmed the solution found in work with GPT-5.4 Pro, and began preparing an article. The new result's verification chain starts with a ready-made object: Alpöge's string and the response with the decoder program.
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X (formerly Twitter)
levent (@__alpoge__) on X
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