🎞 Co-expression network analysis using RNA-Seq data
💥Free recorded tutorial on Co-expression network analysis using RNA-Seq data presented at the ISCB DC Regional Student Group Workshop at the University of Maryland – College Park (June 15 2016).
🔹This tutorial provide a simple overview of co-expression network analysis, with an emphasis on the use of RNA-Seq data.A motivation for the use of co-expression network analysis is provided and compared to other common types of RNA-Seq analyses such as differential expression analysis and gene set enrichment analysis. The use of adjacency matrices to represent networks is explored for several different types of networks and a small synthetic dataset is used to demonstrate each of the major steps in co-expression network construction and module detection. The tutorial portion of the presentation then applies some of these principles using a real dataset containing ~3000 genes, after filtering.
📽Watch
📱Channel: @ComplexNetworkAnalysis
#video #Co_expression_network #RNA_Seq
💥Free recorded tutorial on Co-expression network analysis using RNA-Seq data presented at the ISCB DC Regional Student Group Workshop at the University of Maryland – College Park (June 15 2016).
🔹This tutorial provide a simple overview of co-expression network analysis, with an emphasis on the use of RNA-Seq data.A motivation for the use of co-expression network analysis is provided and compared to other common types of RNA-Seq analyses such as differential expression analysis and gene set enrichment analysis. The use of adjacency matrices to represent networks is explored for several different types of networks and a small synthetic dataset is used to demonstrate each of the major steps in co-expression network construction and module detection. The tutorial portion of the presentation then applies some of these principles using a real dataset containing ~3000 genes, after filtering.
📽Watch
📱Channel: @ComplexNetworkAnalysis
#video #Co_expression_network #RNA_Seq
YouTube
DC ISCB Workshop 2016 - Co-expression network analysis using RNA-Seq data (Keith Hughitt)
Overview
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Tutorial on Co-expression network analysis using RNA-Seq data presented at the ISCB DC Regional Student Group Workshop at the University of Maryland - College Park (June 15 2016).
Abstract
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In this presentation, I provide…
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Tutorial on Co-expression network analysis using RNA-Seq data presented at the ISCB DC Regional Student Group Workshop at the University of Maryland - College Park (June 15 2016).
Abstract
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In this presentation, I provide…
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📄A comprehensive review and evaluation of graph neural networks for non-coding RNA and complex disease associations
📘 Journal: BRIEFINGS IN BIOINFORMATICS (I.F=10.6)
🗓Publish year: 2023
📎Study paper
📱Channel: @ComplexNetworkAnalysis
#paper #GNN #non_coding #RNA #complex_disease #review
📘 Journal: BRIEFINGS IN BIOINFORMATICS (I.F=10.6)
🗓Publish year: 2023
📎Study paper
📱Channel: @ComplexNetworkAnalysis
#paper #GNN #non_coding #RNA #complex_disease #review
👍3
Human_DNARNA_motif_mining_using_deep_learning_methods_a_scoping.pdf
2.3 MB
📃 Human DNA/RNA motif mining using deep-learning methods: a scoping review
📘 Journal: Network Modeling Analysis in Health Informatics and Bioinformatics (I.F=1.077)
🗓 Publish year: 2023
🧑💻Authors: Rajashree Chaurasia & Udayan Ghose
🏢Universities: Guru Gobind Singh Indraprastha University
📎 Study the paper
📲Channel: @ComplexNetworkAnalysis
#paper #motif #education #review #DNA #RNA #deep_learning
📘 Journal: Network Modeling Analysis in Health Informatics and Bioinformatics (I.F=1.077)
🗓 Publish year: 2023
🧑💻Authors: Rajashree Chaurasia & Udayan Ghose
🏢Universities: Guru Gobind Singh Indraprastha University
📎 Study the paper
📲Channel: @ComplexNetworkAnalysis
#paper #motif #education #review #DNA #RNA #deep_learning
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