📃Protein–RNA interaction prediction with deep learning: structure matters
💥From abstract: .... In this work, we give a thorough review of this field, surveying both the binding site and binding preference prediction problems and covering the commonly used datasets, features and models. We also point out the potential challenges and opportunities in this field. This survey summarizes the development of the RNA-binding protein–RNA interaction field in the past and foresees its future development in the post-AlphaFold era.
📘Journal: Briefings in Bioinformatics (I.F.=13.994)
🗓Publish year: 2021
📎 Study the paper
📲Channel: @Bioinformatics
#review #binding_site #prediction
💥From abstract: .... In this work, we give a thorough review of this field, surveying both the binding site and binding preference prediction problems and covering the commonly used datasets, features and models. We also point out the potential challenges and opportunities in this field. This survey summarizes the development of the RNA-binding protein–RNA interaction field in the past and foresees its future development in the post-AlphaFold era.
📘Journal: Briefings in Bioinformatics (I.F.=13.994)
🗓Publish year: 2021
📎 Study the paper
📲Channel: @Bioinformatics
#review #binding_site #prediction
❤8👍3🔥1👏1
📃Long non-coding RNA and RNA-binding protein interactions in cancer: Experimental and machine learning approaches
📗 Journal: Seminars in Cancer Biology (I.F.=14.5)
🗓Publish year: 2022
🧑💻Authors: Hibah Shaath, Radhakrishnan Vishnubalaji, Ramesh Elango, ...
🏢University: Hamad Bin Khalifa University (HBKU), Qatar
📎 Study the paper
📲Channel: @Bioinformatics
#review #rna #binding #cancer
📗 Journal: Seminars in Cancer Biology (I.F.=14.5)
🗓Publish year: 2022
🧑💻Authors: Hibah Shaath, Radhakrishnan Vishnubalaji, Ramesh Elango, ...
🏢University: Hamad Bin Khalifa University (HBKU), Qatar
📎 Study the paper
📲Channel: @Bioinformatics
#review #rna #binding #cancer
❤3👍2
🎓RNA Binding Protein Target Site Identification Using Machine Learning
📕PhD Thesis from Masaryk University, Czechia
🗓Publish year: 2023
📎 Study thesis
📲Channel: @Bioinformatics
#thesis #ml #protein #binding_site
📕PhD Thesis from Masaryk University, Czechia
🗓Publish year: 2023
📎 Study thesis
📲Channel: @Bioinformatics
#thesis #ml #protein #binding_site
❤5👍3🙏2
📑 A brief survey of deep learning-based models for CircRNA-protein binding sites prediction
📔 Journal: Neurocomputing (I.F.=5.5)
🗓 Publish year: 2025
🧑💻Authors: Zhen Shen, Lin Yuan, Wenzheng Bao , ...
🏢Universities: Nanyang Institute of Technology - Qilu University of Technology - Xuzhou University of Technology-Eastern Institute of Technology, China
📎 Study the paper
📲Channel: @Bioinformatics
#review #dna #deep_learning #circRNA #binding
📔 Journal: Neurocomputing (I.F.=5.5)
🗓 Publish year: 2025
🧑💻Authors: Zhen Shen, Lin Yuan, Wenzheng Bao , ...
🏢Universities: Nanyang Institute of Technology - Qilu University of Technology - Xuzhou University of Technology-Eastern Institute of Technology, China
📎 Study the paper
📲Channel: @Bioinformatics
#review #dna #deep_learning #circRNA #binding
👍5👏2👌1
📄 Classifying covalent protein binders by their targeted binding site
📓 Journal: Bioorganic & Medicinal Chemistry Letters (I.F.=2.5)
🗓Publish year: 2025
🧑💻Authors: Walaa A. Bedewy, John W. Mulawka, Marc J. Adler
🏢Universities: Toronto Metropolitan University, Canada - Helwan University, Egypt
📎 Study the paper
📲Channel: @Bioinformatics
#review #protein #covalent #binding_site
📓 Journal: Bioorganic & Medicinal Chemistry Letters (I.F.=2.5)
🗓Publish year: 2025
🧑💻Authors: Walaa A. Bedewy, John W. Mulawka, Marc J. Adler
🏢Universities: Toronto Metropolitan University, Canada - Helwan University, Egypt
📎 Study the paper
📲Channel: @Bioinformatics
#review #protein #covalent #binding_site
❤3👏1
📃 Artificial intelligence in metalloprotein binding site prediction: A systematic review bridging bioinformatics and biotechnology
📗 Journal: International Journal of Biological Macromolecules (I.F.=8.5)
🗓Publish year: 2025
🧑💻Authors: Fereshteh Noroozi Tiyoula, Fatemeh Vafaee Sharbaf, Karim Rahimian ,...
🏢Universities: Institute of Biochemistry and Biophysics (IBB) at University of Tehran - Tehran University of Medical Sciences, Iran
📎 Study the paper
📲Channel: @Bioinformatics
#review #binding_site #metaloprotein
📗 Journal: International Journal of Biological Macromolecules (I.F.=8.5)
🗓Publish year: 2025
🧑💻Authors: Fereshteh Noroozi Tiyoula, Fatemeh Vafaee Sharbaf, Karim Rahimian ,...
🏢Universities: Institute of Biochemistry and Biophysics (IBB) at University of Tehran - Tehran University of Medical Sciences, Iran
📎 Study the paper
📲Channel: @Bioinformatics
#review #binding_site #metaloprotein
🙏2👍1🔥1