The Journal Club - Life Sciences & Biotech
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The Journal Club to get updates about recent research advancements from the field of Biology or related fields, computational tools & resources for thesis writing.

Queries or suggestions? Connect with @ScientificReporter

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/ask Composition of RPMI Media?
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/ask Which is the rarest blood group in the world?
The Journal Club - Life Sciences & Biotech
https://www.labroots.com/trending/cancer/24797/fasting-hurt-immune-system
The research published uses Huc extracted from Mycobacterium smegmatis which can survive in nutrient deficient condition. Chris Greening earlier published about the survival of M. smegmatis by enhanced co-metabolism of atmospheric H2. Almost nine year later he successfully isolated the Huc enzyme responsible for atmospheric hydrogen gas molecule.

bi0.in/s71?q=tg
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Racker’s particles occur in _________
Anonymous Quiz
32%
Mitochondria
17%
Nucleus
17%
Chromosome
35%
Golgi complex
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NVIDIA today announced an expanded set of generative AI cloud services for customizing AI foundation models to accelerate the creation of new proteins and therapeutics, as well as research in the fields of genomics, chemistry, biology and molecular dynamics.

Part of NVIDIA AI Foundations, the new BioNeMo Cloud service offering — for both AI model training and inference — accelerates the most time-consuming and costly stages of drug discovery. It enables researchers to fine-tune generative AI applications on their own proprietary data, and to run AI model inference directly in a web browser or through new cloud application programming interfaces (APIs) that easily integrate into existing applications.
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Are you a Ph.D student / Researcher? Here are some AI tools that you can use at various stages of your research:

☑️Research Planning
GanttPRO A research planning tool to create a timeline, tasks, follow progress and deadlines.
https://ganttpro.com/

☑️Finding & Synthesizing Literature
Semantic Scholar:
Get access to 200 million research papers, discover links between topics, get recommendations based on recent searches and generate summaries.
https://lnkd.in/dKkGMeXw

Scholarcy
AI powered article summarizer which identifies key info like participants, data analysis, main findings and limitations.
https://lnkd.in/d-n_yEHn

Paper Digest
Creates 3-minute summaries of research papers by extracting key ideas and sentences.
https://lnkd.in/d7TsH96f

Content Mine
Enables you to find, download, analyze, and extract knowledge from academic papers.
https://lnkd.in/dQ73C2Af

Elink.io
Enables you to save the content from around the web: articles, videos, cloud files, social media posts and share them with peers.
https://elink.io/

Elicit
Another AI tool which helps you find relevant papers without perfect keyword match, summarize takeaways from the paper specific to your question, and extract key information from the papers.
https://elicit.org/

Scite
Allows researcher to see how publication has been cited by providing the context of citation and discover supporting and contrasting evidence for each paper.
https://scite.ai/

SciSpace Copilot
A multi-lingual AI tool, is helps you comprehend the paper (and the math and tables in it), seek answers to your queries, turn lengthy texts and sections into easy to consume summaries.
https://typeset.io/

☑️Data Analysis
Excel Formula Bot
Converts your text instructions into spreadsheet formula.
https://lnkd.in/dRFKeC25!

☑️Academic Writing
Trinka
A grammar checker and language correction AI tool for academic and technical writing; finds errors unique to academic writing that other grammar checker tools may miss.
https://www.trinka.ai/

Lex
A text editor which helps you neatly store and format documents with simple prompts including references, headers and bulleted list.
https://lex.page/

Scrivener
A tool for long writing projects. It helps you fight page fright and writer's block by letting you write text in any order and find its place in the thesis later. Helpful in keeping your notes organized.
https://lnkd.in/dtXgAQnT

☑️Citations/ Bibliography/ Referencing
Endnote
Researchers waste nearly 2,00,000 hours/year formatting citation! This tool simplifies formatting bibliographies, finding impact of references and full texts.
https://endnote.com/

Mendeley
Creates references, citations, and bibliographies in multiple journal styles.
https://www.mendeley.com/

P.S These tools do not aim to write your thesis or paper but enable you to optimize your time and resources as you do your research.

The list isn't exhaustive. Feel free to add.
#phd #artificialintelligence #research
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Forwarded from Artificial Intelligence
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Photoshop is finished. 🏌

Imagine being able to perfect any picture exactly how you want it.

Now it's as simple as drag and drop with this AI:

Researchers from Max Planck Institute for Informatics, MIT and Google have developed DragGAN.

It lets you 'drag' any part of a picture to exactly where you want it.

DragGAN has 2 main parts:
• Motion supervision — this guides the point you're moving towards the target position
• Point tracking — this uses special features to keep an eye on the point you're moving

This means it can make really realistic changes, even for difficult tasks like creating hidden parts of images or changing shapes while keeping them looking natural.

Where Photoshop often requires intricate skill and knowledge, DragGAN makes complex edits as simple as drag and drop.

While DragGAN excels at precise image deformation, I still feel Photoshop's comprehensive tools for graphic design hold value.

Code: https://github.com/XingangPan/DragGAN
Paper: https://huggingface.co/papers/2305.10973
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NoiseCognitiveFunctionandWorkerProductivity.pdf
7.8 MB
Noise is a secret destroyer of productivity

It is secret because it impacts cognition, not effort, so we don’t notice, but a 10db noise increase (from a dishwasher to a vacuum) lowers productivity by 5%.
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1-s2.0-S0092867423002167-main.pdf
1.5 MB
Cancer Therapy Snapshot (Cell, 2023)
Forwarded from Artificial Intelligence
DALL·E 3 is here and it looks amazing!

Some thoughts:

From the announcement: "DALL·E 3 delivers significant improvements over DALL·E 2 when generating text within an image and in human details like hands. DALL·E 3 creates engaging images by default—no hacks or prompt engineering required."

Very curious to see to what extent we will rely on prompt engineering for this version. That has been one of the pain points for image generation systems, making them hard to use or get good results with.

OpenAI claims we won't need as much prompt engineering and that DALL·E 3 adheres better to prompt instructions and details.

Also, incredibly excited about the availability of DALL·E 3 in ChatGPT Plus and how this could improve the entire process of prompting and discovering interesting prompts to generate compelling and unique images. openai.com/dall-e-3
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If you think that AI was born in 2022 👐🏾
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Which of the following is X-linked recessive disorder?
Anonymous Quiz
47%
Color blindness
40%
Sickle cell anemia
5%
PTC tasting
8%
Albinism
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The Journal Club - Life Sciences & Biotech
Photo
CommunicatIon between neurons in the brain involves the release of either fast (for example, glutamate, γ-aminobutyric acid) or slow neurotransmitters (for example, catecholamines, histamine) from the presynaptic terminal, alone or together with neuromodulators. Fast neurotransmitters induce ion currents in the postsynaptic neuron. By contrast, slow neurotransmitters and neuromodulators act on metabotropic G protein–coupled receptors (GPCRs) in the postsynaptic membrane to trigger intracellular second messenger cascades. Neuropeptides are a superfamily of neuromodulators—more than 100 have been identified . However, studying neuropeptides is challenging owing to the limitations of available tools for their detection. Furthermore, despite decades of drug development aimed at neuropeptide-GPCRs, neither their localization nor the dynamics of ligand-induced activation is sufficiently understood. On page 786 of this issue, Wang et al. (1) describe GPCR-activation–based sensors (GRABs) that can track neuropeptide action in vivo. Such GRABs have the potential to provide new information on physiological processes (2) and the role of GPCRs in brain diseases.

https://www.science.org/doi/10.1126/science.adl1788
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Interesting history of Pipette development and patents.


https://youtu.be/hW1pr8nDhhE
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FIVE potential alternates to Sci-Hub

Sci-Hub has been a lifesaver for researchers across the globe, especially those who cannot afford to pay huge amounts to access key articles and are not associated with institutions that could offer access. Now that Sci-hub is partially/ fully shut down in several countries or crippled from uploading recent literature, are there any close alternatives?

1. Unpaywall: https://unpaywall.org/

An open database of 47,798,238 free scholarly articles. They harvest open-access content from over 50,000 publishers and repositories and make it easy to find, track, and use

2. Paper Panda: https://paperpanda.app/

This is a browser plug-in. A paywalled paper could be available through your library or university, or to download for free through an open access portal, maybe the author uploaded a PDF to a website somewhere – but how are you going to find it? Just click the tiny panda in your toolbar and the panda will run off and find the paper for you (all in the words of the creators)

3. Open Access Button: https://lnkd.in/gKRjY6fb

A browser extension that helps you to request for paywalled papers. Free, legal research articles delivered instantly or automatically requested from authors

4. Academia: https://www.academia.edu/

Academia.edu is a for-profit open repository of academic articles free to read by visitors. Uploading and downloading are restricted to registered users

5. LibGen: https://libgen.is/

This one is also a bit controversial and under court processes. They are also linked to resources from Sci-Hub. Libgen describes itself as a "links aggregator", providing a searchable database of items "collected from publicly available public Internet resources" as well as files uploaded "from users"

Where else can you access papers without huge subscription fees?

Copied from LinkedIn post of Sowmiya Rani, Ph.D. ⬇️⬇️⬇️

📩 sowmis.aww@gmail.com
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