🎞 Lessons from the Pandemic for Machine Learning and Medical Imaging
💥Presented on behalf of Isaac Newton Institute for Mathematical Sciences
🌐 Watch
📲Channel: @Bioinformatics
💥Presented on behalf of Isaac Newton Institute for Mathematical Sciences
🌐 Watch
📲Channel: @Bioinformatics
📕🎬Online tutorial
⚡️Introductory bioinformatics
A curated set of EMBL-EBI online courses
This curated pathway brings together a number of online tutorials and recorded webinars to provide an introduction to bioinformatics, a brief tour of the resources available from EMBL-EBI and more details about some of those resources, including Ensembl, UniProt and Expression Atlas.
♦️What will you achieve?
By the end of the course you will be able to:
▫️Outline what bioinformatics is
▫️Describe the importance of data management
▫️Recall which resources are available from EMBL-EBI
▫️Know where to find information about genes
▫️View information on gene expression
▫️Search for protein information
▫️Know where to find out more about EMBL-EBI resources
🌐 Enter Course
📲Channel: @Bioinformatics
⚡️Introductory bioinformatics
A curated set of EMBL-EBI online courses
This curated pathway brings together a number of online tutorials and recorded webinars to provide an introduction to bioinformatics, a brief tour of the resources available from EMBL-EBI and more details about some of those resources, including Ensembl, UniProt and Expression Atlas.
♦️What will you achieve?
By the end of the course you will be able to:
▫️Outline what bioinformatics is
▫️Describe the importance of data management
▫️Recall which resources are available from EMBL-EBI
▫️Know where to find information about genes
▫️View information on gene expression
▫️Search for protein information
▫️Know where to find out more about EMBL-EBI resources
🌐 Enter Course
📲Channel: @Bioinformatics
📽 Analysis of Viral Sequencing Data
💥Recorded lecture from Computational Genomics Summer Institute: CGSI
🌐 Watch
📲Channel: @Bioinformatics
💥Recorded lecture from Computational Genomics Summer Institute: CGSI
🌐 Watch
📲Channel: @Bioinformatics
YouTube
Alex Zelikovsky | Analysis of Viral Sequencing Data | CGSI 2019
Speaker: Alex Zelikovsky
Talk: " Analysis of Viral Sequencing Data"
Location: Mong Auditorium, 7/18/19
Talk: " Analysis of Viral Sequencing Data"
Location: Mong Auditorium, 7/18/19
👨🏫 Introduction to R for Health Data Science
💥Free online course from University of Manchester
🌐 Enter the course
📲Channel: @Bioinformatics
💥Free online course from University of Manchester
🌐 Enter the course
📲Channel: @Bioinformatics
📕Reproducible Bioinformatics Research for Biologists
🔽 Download book chapter
📲Channel: @Bioinformatics
🔽 Download book chapter
📲Channel: @Bioinformatics
📑Machine learning in medicine: a practical introduction
💥We address the need for capacity development in this area by providing a conceptual introduction to machine learning alongside a practical guide to developing and evaluating predictive algorithms using freely-available open source software and public domain data.
🌐 Read the paper
📲Channel: @Bioinformatics
💥We address the need for capacity development in this area by providing a conceptual introduction to machine learning alongside a practical guide to developing and evaluating predictive algorithms using freely-available open source software and public domain data.
🌐 Read the paper
📲Channel: @Bioinformatics
🎬Free webinar
🧑💻Designing and Optimizing RNA-Seq Experiments
Learning Objectives:
▫️Know Available RNA sequencing technologies and their applications
▫️Optimizing library preparation depending on the sequencing platform
▫️How to obtain the proper sample quality required for each RNA sequencing technology
▫️The importance of replicate numbers to obtain reliable results
🗓 Date:
Monday, September 27, 2021
🕚 Time:
11:00 AM - 12:00 PM Eastern Time
✍️ Registration and more details
📲Channel: @Bioinformatics
🧑💻Designing and Optimizing RNA-Seq Experiments
Learning Objectives:
▫️Know Available RNA sequencing technologies and their applications
▫️Optimizing library preparation depending on the sequencing platform
▫️How to obtain the proper sample quality required for each RNA sequencing technology
▫️The importance of replicate numbers to obtain reliable results
🗓 Date:
Monday, September 27, 2021
🕚 Time:
11:00 AM - 12:00 PM Eastern Time
✍️ Registration and more details
📲Channel: @Bioinformatics
📖📺Genomics Boot Camp (Online Book + YouTube channel)
💥The Genomics Boot Camp is a resource that helps you to start your journey in practical analysis of genomic data, with a focus on SNP data. The chapters follow the same structure all the time: provide background information and practical insight to the topic, and when appropriate exercises to reinforce the obtained knowledge. The Genomics Boot Camp as a whole was designed to cater to various learning preferences with written text, video demonstrations, and the possibility of hands-on exercises. There is a certain overlap between the book and the YouTube channel contents, but each has unique pieces of information as well. So for the full experience, I suggest checking out both.
🎦 Movies
📓Online Tutorial
📲Channel: @Bioinformatics
💥The Genomics Boot Camp is a resource that helps you to start your journey in practical analysis of genomic data, with a focus on SNP data. The chapters follow the same structure all the time: provide background information and practical insight to the topic, and when appropriate exercises to reinforce the obtained knowledge. The Genomics Boot Camp as a whole was designed to cater to various learning preferences with written text, video demonstrations, and the possibility of hands-on exercises. There is a certain overlap between the book and the YouTube channel contents, but each has unique pieces of information as well. So for the full experience, I suggest checking out both.
🎦 Movies
📓Online Tutorial
📲Channel: @Bioinformatics
🔥1
📑Bioinformatics core competencies for undergraduate life sciences education
From Paper Abstract: Although bioinformatics is becoming increasingly central to research in the life sciences, bioinformatics skills and knowledge are not well integrated into undergraduate biology education. This curricular gap prevents biology students from harnessing the full potential of their education, limiting their career opportunities and slowing research innovation. To advance the integration of bioinformatics into life sciences education, a framework of core bioinformatics competencies is needed. To that end, we here report the results of a survey of biology faculty in the United States about teaching bioinformatics to undergraduate life scientists. Responses were received from 1,260 faculty representing institutions in all fifty states with a combined capacity to educate hundreds of thousands of students every year...
🌐 Read the paper
📲Channel: @Bioinformatics
From Paper Abstract: Although bioinformatics is becoming increasingly central to research in the life sciences, bioinformatics skills and knowledge are not well integrated into undergraduate biology education. This curricular gap prevents biology students from harnessing the full potential of their education, limiting their career opportunities and slowing research innovation. To advance the integration of bioinformatics into life sciences education, a framework of core bioinformatics competencies is needed. To that end, we here report the results of a survey of biology faculty in the United States about teaching bioinformatics to undergraduate life scientists. Responses were received from 1,260 faculty representing institutions in all fifty states with a combined capacity to educate hundreds of thousands of students every year...
🌐 Read the paper
📲Channel: @Bioinformatics
2021_Differential_Expression_Analysis_of_RNA_Seq_Data_and_Co_expression.pdf
9.8 MB
📑Practical Differential Expression Analysis of RNA-Seq Data and Co-expression Networks
📲Channel: @Bioinformatics
📲Channel: @Bioinformatics
🎞 📔 Pathways and Network Analysis 2021
👨🏻💻3 days full workshop details
🌐 Workshop details
📲Channel: @Bioinformatics
👨🏻💻3 days full workshop details
🌐 Workshop details
📲Channel: @Bioinformatics
👷Job opportunity
👨🏫Eligibility: Master or PhD degree in Bioinformatics, Computational Biology or similar area.
📑Contract type: Pemanent contract
🕦Work Hours: Full time - 40h/week
📍Location: Strassen (Luxembourg)
🗓 Start date: immediate
ℹ️ More info and apply
📲Channel: @Bioinformatics
👨🏫Eligibility: Master or PhD degree in Bioinformatics, Computational Biology or similar area.
📑Contract type: Pemanent contract
🕦Work Hours: Full time - 40h/week
📍Location: Strassen (Luxembourg)
🗓 Start date: immediate
ℹ️ More info and apply
📲Channel: @Bioinformatics
💵 25 awarded funds across 30 U.S. research sites
💥NIH providing $185 million for research to advance understanding of how human genome functions
ℹ️ More information
📲Channel: @Bioinformatics
💥NIH providing $185 million for research to advance understanding of how human genome functions
ℹ️ More information
📲Channel: @Bioinformatics
📹Introduction to Weighted Gene Co-expression Network Analysis (WGCNA)
💥recorded webinar
🎖 Goals:
▫️Introduction and motivation for co-expression network analysis
▫️Basics of weighted gene co-expression network analysis
▫️Step-by-step guide to WGCNA using the WGCNA package in R.
🌐 Watch
📲Channel: @Bioinformatics
💥recorded webinar
🎖 Goals:
▫️Introduction and motivation for co-expression network analysis
▫️Basics of weighted gene co-expression network analysis
▫️Step-by-step guide to WGCNA using the WGCNA package in R.
🌐 Watch
📲Channel: @Bioinformatics
YouTube
Webinar #7 – Introduction to Weighted Gene Co-expression Network Analysis
Goals of this webinar (molecular networks):
Introduction and motivation for co-expression network analysis
Basics of weighted gene co-expression network analysis
Step-by-step guide to WGCNA using the wgcna package in R.
Background reading available at: h…
Introduction and motivation for co-expression network analysis
Basics of weighted gene co-expression network analysis
Step-by-step guide to WGCNA using the wgcna package in R.
Background reading available at: h…
📑 How helpful are the protein-protein interaction databases and which ones?
🖇 Study the paper
📲Channel: @Bioinformatics
🖇 Study the paper
📲Channel: @Bioinformatics
👍1
🎬How machine learning approaches can be tailored to making discoveries with biological data
🧑🏫Nine hours recorded workshop + Slides
💥ICML 2021 Workshop on Computational Biology
🎥 Watch
🌐 Workshop website
📲Channel: @Bioinformatics
🧑🏫Nine hours recorded workshop + Slides
💥ICML 2021 Workshop on Computational Biology
🎥 Watch
🌐 Workshop website
📲Channel: @Bioinformatics
💾Ten simple rules for writing a paper about scientific software
Abstract: Papers describing software are an important part of computational fields of scientific research, like bioinformatics. These “software papers” are unique in a number of ways, and they require special consideration to improve their impact on the scientific community and their efficacy at conveying important information. Here, we discuss 10 specific rules for writing software papers, covering some of the different scenarios and publication types that might be encountered, and important questions from which all computational researchers would benefit by asking along the way.
🌐 Study the paper
📲Channel: @Bioinformatics
Abstract: Papers describing software are an important part of computational fields of scientific research, like bioinformatics. These “software papers” are unique in a number of ways, and they require special consideration to improve their impact on the scientific community and their efficacy at conveying important information. Here, we discuss 10 specific rules for writing software papers, covering some of the different scenarios and publication types that might be encountered, and important questions from which all computational researchers would benefit by asking along the way.
🌐 Study the paper
📲Channel: @Bioinformatics
🎬Free webinar
🧑💻Impact of SARS-CoV-2 Infection on Host Gene Expression
🗓 Date:
Thursday, September 23, 2021
🕚 Time:
2pm EDT (11am PDT / 1pm CDT) 60 min
✍️ Registration and more details
📲Channel: @Bioinformatics
🧑💻Impact of SARS-CoV-2 Infection on Host Gene Expression
🗓 Date:
Thursday, September 23, 2021
🕚 Time:
2pm EDT (11am PDT / 1pm CDT) 60 min
✍️ Registration and more details
📲Channel: @Bioinformatics
Xtalks
Impact of SARS-CoV-2 Infection on Host Gene Expression Across Multiple Tissues at Single Cell Resolution
Join this webinar to learn more about the alteration of host gene expression as a result of COVID-19 infection, and novel laboratory techniques designed to evaluate this at a single-cell resolution