π Data Visualization with R - Online Book
R is an amazing platform for data analysis, capable of creating almost any type of graph. This book helps you create the most popular visualizations - from quick and dirty plots to publication-ready graphs. The text relies heavily on the ggplot2 package for graphics, but other approaches are covered as well.
π§βπ« Read the book from here:
https://rkabacoff.github.io/datavis/
π²Channel: @Bioinformatics
R is an amazing platform for data analysis, capable of creating almost any type of graph. This book helps you create the most popular visualizations - from quick and dirty plots to publication-ready graphs. The text relies heavily on the ggplot2 package for graphics, but other approaches are covered as well.
π§βπ« Read the book from here:
https://rkabacoff.github.io/datavis/
π²Channel: @Bioinformatics
𧬠Sample Bioinformatics Analyses for Hub Gene Identification
π https://www.hindawi.com/journals/cmmm/2021/5548918/
π²Channel: @Bioinformatics
π https://www.hindawi.com/journals/cmmm/2021/5548918/
π²Channel: @Bioinformatics
𧫠An insilico method to predict genetics that underpin adverse drug reactions
https://www.sciencedirect.com/science/article/pii/S2215016119303516#fig0015
π²Channel: @Bioinformatics
https://www.sciencedirect.com/science/article/pii/S2215016119303516#fig0015
π²Channel: @Bioinformatics
π Current trend and development in bioinformatics research
https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-020-03874-y
π²Channel: @Bioinformatics
https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-020-03874-y
π²Channel: @Bioinformatics
π¨βπ« Two Days Hands on training on Cancer Genomics
π Duration: 22 May and 23 May 2021
β° 11 a.m. to 12:30 p.m. and 1 p.m. to 2:30 pm. (IST)
πLocation: Virtual via Zoom
π»Software used: R studio
π§Eligibility: Anyone from Life science or related fields.
βοΈ Registration Link
https://forms.gle/r5PADzXaZG5RmqBr5
π² Fees: Rs. 799 | 25 USD
π Website: https://lifegenbio.com/
π²Channel: @Bioinformatics
π Duration: 22 May and 23 May 2021
β° 11 a.m. to 12:30 p.m. and 1 p.m. to 2:30 pm. (IST)
πLocation: Virtual via Zoom
π»Software used: R studio
π§Eligibility: Anyone from Life science or related fields.
βοΈ Registration Link
https://forms.gle/r5PADzXaZG5RmqBr5
π² Fees: Rs. 799 | 25 USD
π Website: https://lifegenbio.com/
π²Channel: @Bioinformatics
π’ ISCB-Africa ASBCB Bioinformatics Conference 2021
Online Event
π£ Deadline for abstract submission: April 19, 2021
π Date: 7-10 June, 2021
πWebsite & more info.: https://www.iscb.org/iscbafrica2021
π²Channel: @Bioinformatics
Online Event
π£ Deadline for abstract submission: April 19, 2021
π Date: 7-10 June, 2021
πWebsite & more info.: https://www.iscb.org/iscbafrica2021
π²Channel: @Bioinformatics
π Network based Approach to Drug Discovery: A Mini Review
π Paper link
π²Channel: @Bioinformatics
π Paper link
π²Channel: @Bioinformatics
βοΈ7 Key points about big data in pandemics
The use of data has played a central role in the COVID-19 pandemic, but it should come as no surprise that researchers are already looking at ways to improve data acquisition, management, and access. EMBLβs most recent Science and Society seminar, βHarnessing Big Data to Monitor and Tackle Pandemicsβ, featured a panel of three speakers who shared their experiences and conclusions about these topics.
π https://www.miragenews.com/just-gist-big-data-and-pandemics-in-seven-key-563697/
π²Channel: @Bioinformatics
The use of data has played a central role in the COVID-19 pandemic, but it should come as no surprise that researchers are already looking at ways to improve data acquisition, management, and access. EMBLβs most recent Science and Society seminar, βHarnessing Big Data to Monitor and Tackle Pandemicsβ, featured a panel of three speakers who shared their experiences and conclusions about these topics.
π https://www.miragenews.com/just-gist-big-data-and-pandemics-in-seven-key-563697/
π²Channel: @Bioinformatics
π The entire genome of a woman from 35,000 years ago sequenced
https://phys.org/news/2021-05-entire-genome-petera-muierii-sequenced.html
π²Channel: @Bioinformatics
https://phys.org/news/2021-05-entire-genome-petera-muierii-sequenced.html
π²Channel: @Bioinformatics
phys.org
The entire genome from PeΕtera Muierii 1 sequenced
For the first time, researchers have successfully sequenced the entire genome from the skull of PeΕtera Muierii 1, a woman who lived in today's Romania 35,000 years ago. Her high genetic diversity shows ...
π₯Network Analysis of Herbs Recommended for the Treatment of COVID-19
In this study, we aimed to identify the pattern and combination of herbs used in the formulae recommended for treating different stages of COVID-19 using a network analysis approach. A total of 142 herbal formulae comprising 416 herbs were analyzed. All possible herbal pairs were examined, and the top frequently used herbal pairs were identified for each disease stage. The herb Glycyrrhizae radix et rhizoma is only identified in one herb pair, even though this herb is identified as one of the herbs with high frequency of use for every disease stage. This study may provide new insights and ideas for clinical research in the future.
πStudy more: https://doi.org/10.2147/IDR.S305176
π²Channel: @Bioinformatics
In this study, we aimed to identify the pattern and combination of herbs used in the formulae recommended for treating different stages of COVID-19 using a network analysis approach. A total of 142 herbal formulae comprising 416 herbs were analyzed. All possible herbal pairs were examined, and the top frequently used herbal pairs were identified for each disease stage. The herb Glycyrrhizae radix et rhizoma is only identified in one herb pair, even though this herb is identified as one of the herbs with high frequency of use for every disease stage. This study may provide new insights and ideas for clinical research in the future.
πStudy more: https://doi.org/10.2147/IDR.S305176
π²Channel: @Bioinformatics
π¬Introduction to Biological Network Analysis
π©βπ«Mini Courses from Donna Slonim at Tufts University
Session 1: Network Basics and Properties
Session 2: From Graphs to Function
Session 3: Identifying Network Modules
Session 4: Network Alignment and Querying
π²Channel: @Bioinformatics
π©βπ«Mini Courses from Donna Slonim at Tufts University
Session 1: Network Basics and Properties
Session 2: From Graphs to Function
Session 3: Identifying Network Modules
Session 4: Network Alignment and Querying
π²Channel: @Bioinformatics
π§βπ¨ Tasks, Techniques, and Tools for Genomic Data Visualization
https://onlinelibrary.wiley.com/doi/full/10.1111/cgf.13727
π²Channel: @Bioinformatics
https://onlinelibrary.wiley.com/doi/full/10.1111/cgf.13727
π²Channel: @Bioinformatics
πDrug Repurposing for the Treatment of COVID-19: A Knowledge Graph Approach
π https://onlinelibrary.wiley.com/doi/full/10.1002/adtp.202100055
A COVID-19 knowledge graph by integrating 14 public bioinformatic databases containing information on drugs, genes, proteins, viruses, diseases, symptoms and their linkages is developed. An algorithm is developed to extract hidden linkages connecting drugs and COVID-19 from the knowledge graph, to generate and rank proposed drug candidates for repurposing as treatments by integrating three scores for each drug: motif scores, knowledge graph PageRank scores, and knowledge graph embedding scores. The knowledge graph contains over 48 000 nodes and 13 37 000 edges, including 13 563 molecules in the DrugBank database. From the 5624 molecules identified by the motif-discovery algorithms, ranking results show that 112 drug molecules had the top 2% scores, of which 50 existing drugs with other indications approved by health administrations reported.
π²Channel: @Bioinformatics
π https://onlinelibrary.wiley.com/doi/full/10.1002/adtp.202100055
A COVID-19 knowledge graph by integrating 14 public bioinformatic databases containing information on drugs, genes, proteins, viruses, diseases, symptoms and their linkages is developed. An algorithm is developed to extract hidden linkages connecting drugs and COVID-19 from the knowledge graph, to generate and rank proposed drug candidates for repurposing as treatments by integrating three scores for each drug: motif scores, knowledge graph PageRank scores, and knowledge graph embedding scores. The knowledge graph contains over 48 000 nodes and 13 37 000 edges, including 13 563 molecules in the DrugBank database. From the 5624 molecules identified by the motif-discovery algorithms, ranking results show that 112 drug molecules had the top 2% scores, of which 50 existing drugs with other indications approved by health administrations reported.
π²Channel: @Bioinformatics
πVery good introduction to RNA-seq
Including: 1)Prepare a sequencing library 2)Sequence 3)Data analysis
βοΈ Level: Elementary
https://www.youtube.com/watch?v=tlf6wYJrwKY
π²Channel: @Bioinformatics
Including: 1)Prepare a sequencing library 2)Sequence 3)Data analysis
βοΈ Level: Elementary
https://www.youtube.com/watch?v=tlf6wYJrwKY
π²Channel: @Bioinformatics
YouTube
StatQuest: A gentle introduction to RNA-seq
RNA-seq may sound mysterious, but it's not. Here's go over the main ideas behind how it's done and how the data is analyzed.
NOTE: If you want to learn about ChIP-seq, check out the StatQuest: https://youtu.be/nkWGmaYRues
For a complete index of all theβ¦
NOTE: If you want to learn about ChIP-seq, check out the StatQuest: https://youtu.be/nkWGmaYRues
For a complete index of all theβ¦
πͺProteomics reveals how exercise increases the efficiency of muscle energy production
πhttps://phys.org/news/2021-05-proteomics-reveals-efficiency-muscle-energy.html
π²Channel: @Bioinformatics
πhttps://phys.org/news/2021-05-proteomics-reveals-efficiency-muscle-energy.html
π²Channel: @Bioinformatics
phys.org
Proteomics reveals how exercise increases the efficiency of muscle energy production
Mitochondria are the cell's power plants and produce the majority of a cell's energy needs through an electrochemical process called electron transport chain coupled to another process known as oxidative ...
π§βπ«Workshop RNA-Seq using high-performance computing
πhttps://hbctraining.github.io/Intro-to-rnaseq-hpc-salmon-flipped/schedule/links-to-lessons.html
π₯Learning Objectives
β«οΈUnderstand the necessity for, and use of, the command line interface (bash) and HPC for analyzing high-throughput sequencing data.
β«οΈUnderstand best practices for designing an RNA-seq experiment and analysis the resulting data.
π²Channel: @Bioinformatics
πhttps://hbctraining.github.io/Intro-to-rnaseq-hpc-salmon-flipped/schedule/links-to-lessons.html
π₯Learning Objectives
β«οΈUnderstand the necessity for, and use of, the command line interface (bash) and HPC for analyzing high-throughput sequencing data.
β«οΈUnderstand best practices for designing an RNA-seq experiment and analysis the resulting data.
π²Channel: @Bioinformatics
π§° Resources for Systems/Network Biology
β«οΈIncluding: Tools, Genome Annotation, Orthology Identification, Protein Interaction, Microarray Links, Mass spectrometry-based proteomics, Species Interaction Data, Kinome and Cancer Data, Yeast Links, Worm Links, Fly Links, Mycobacteria Links, Malaria Links, Arabidopsis and other model plant Links, Rice and other crop Links, Mouse Links, Human Links, ...
πhttps://www.cs.ucdavis.edu/~filkov/classes/289l-W11/NetworkResources.htm
π²Channel: @Bioinformatics
β«οΈIncluding: Tools, Genome Annotation, Orthology Identification, Protein Interaction, Microarray Links, Mass spectrometry-based proteomics, Species Interaction Data, Kinome and Cancer Data, Yeast Links, Worm Links, Fly Links, Mycobacteria Links, Malaria Links, Arabidopsis and other model plant Links, Rice and other crop Links, Mouse Links, Human Links, ...
πhttps://www.cs.ucdavis.edu/~filkov/classes/289l-W11/NetworkResources.htm
π²Channel: @Bioinformatics
π1
π Loops & Strands e-Magazine
LLB SCHOOL (Lets Learn Bio-ITSchool) , France
is looking for scientific Reviewers and editors
π₯Required Qualifications :
Btech with experience / Post graduates or PhD / above in any of the below domains:
β«οΈBioinformatics (OMICS studies, structure bioinformatics, programming and data science)
β«οΈBiotechnology/Environmental/Food Science
β«οΈPlantscience/Agriculture/Agro-Informatics
β«οΈIntellectual Property Rights
πΉ Candidates with prior experience in reviewing and editing is preferred
β° Notice period : Immediate joiners
β P. S : First 6 months will act as volunteership, following the position is offered based on the performance
βοΈ Interested candidates share your CV & very short motivation letter to loopsnstrands@llbschool.org
π²Channel: @Bioinformatics
LLB SCHOOL (Lets Learn Bio-ITSchool) , France
is looking for scientific Reviewers and editors
π₯Required Qualifications :
Btech with experience / Post graduates or PhD / above in any of the below domains:
β«οΈBioinformatics (OMICS studies, structure bioinformatics, programming and data science)
β«οΈBiotechnology/Environmental/Food Science
β«οΈPlantscience/Agriculture/Agro-Informatics
β«οΈIntellectual Property Rights
πΉ Candidates with prior experience in reviewing and editing is preferred
β° Notice period : Immediate joiners
β P. S : First 6 months will act as volunteership, following the position is offered based on the performance
βοΈ Interested candidates share your CV & very short motivation letter to loopsnstrands@llbschool.org
π²Channel: @Bioinformatics
π Machine Learning in Computational Biology
βΊRecorded sessions from virtual conference
πhttps://sites.google.com/cs.washington.edu/mlcb2020/
π²Channel: @Bioinformatics
βΊRecorded sessions from virtual conference
πhttps://sites.google.com/cs.washington.edu/mlcb2020/
π²Channel: @Bioinformatics
π Fourth Bioinformatics Contest β an online programming competition
In June 2021 Bioinformatics Institute, ITMO University, Rosalind, and Stepik are organizing the above event
βοΈRegistration is already open
https://stepik.org/course/91751
πOne-week Qualification Round starts on June 12.
The Final Round will last 24 hours on June 26.
Both rounds will be held online.
π₯Last time more than 3000 people from 84 countries worldwide participated in the contest.
π΄ If you enjoy solving complex problems and have some background in Computer Science, Bioinformatics, and Molecular Biology do not hesitate to sign up!
βΉοΈMore details
https://bioinf.me/en/contest
π²Channel: @Bioinformatics
In June 2021 Bioinformatics Institute, ITMO University, Rosalind, and Stepik are organizing the above event
βοΈRegistration is already open
https://stepik.org/course/91751
πOne-week Qualification Round starts on June 12.
The Final Round will last 24 hours on June 26.
Both rounds will be held online.
π₯Last time more than 3000 people from 84 countries worldwide participated in the contest.
π΄ If you enjoy solving complex problems and have some background in Computer Science, Bioinformatics, and Molecular Biology do not hesitate to sign up!
βΉοΈMore details
https://bioinf.me/en/contest
π²Channel: @Bioinformatics
πTrends in the development of miRNA bioinformatics tools
πhttps://academic.oup.com/bib/article/20/5/1836/5047127
π²Channel: @Bioinformatics
πhttps://academic.oup.com/bib/article/20/5/1836/5047127
π²Channel: @Bioinformatics